Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G01340 - ( protein transport protein SEC13 family protein / WD-40 repeat family protein )
29 Proteins interacs with AT3G01340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0607
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT1G12360 | PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT3G18140 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0260
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G46860 | PredictedSynthetic Lethality | FSW = 0.0119
| Unknown | VAM3 SNAP RECEPTOR |
AT3G07100 | PredictedAffinity Capture-MS | FSW = 0.0616
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT1G18640 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0390
| Unknown | PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE |
AT1G31230 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0682
| Unknown | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I) ASPARTATE KINASE/ HOMOSERINE DEHYDROGENASE |
AT1G07670 | PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.0283
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT2G17520 | Predictedinterologs mappinginterologs mappingsynthetic growth defect | FSW = 0.0695
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT3G14120 | PredictedAffinity Capture-Western | FSW = 0.1109
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEAR PORE PROTEIN 84/107 (INTERPROIPR007252) HAS 207 BLAST HITS TO 206 PROTEINS IN 78 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 123 FUNGI - 57 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 5 (SOURCE NCBI BLINK) |
AT2G30050 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3960
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G61760 | Predictedtwo hybrid | FSW = 0.0645
| Unknown | ATIPK2BETA INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ INOSITOL TRISPHOSPHATE 6-KINASE |
AT5G66020 | PredictedSynthetic Lethality | FSW = 0.0366
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT2G38960 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0127
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G63460 | Predictedinteraction predictiontwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.1962
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT1G33410 | PredictedAffinity Capture-Western | FSW = 0.1558
| Unknown | SAR1 (SUPPRESSOR OF AUXIN RESISTANCE1) |
AT4G32910 | PredictedAffinity Capture-Western | FSW = 0.1109
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN NUP85-LIKE (INTERPROIPR011502) HAS 161 BLAST HITS TO 158 PROTEINS IN 60 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 128 FUNGI - 10 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT5G47480 | Predictedtwo hybrid | FSW = 0.0313
| Unknown | UNKNOWN PROTEIN |
AT1G18830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternReconstituted ComplexCo-crystal Structure | FSW = 0.0955
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G17140 | PredictedPhenotypic Suppression | FSW = 0.0172
| Unknown | TROPOMYOSIN-RELATED |
AT1G21570 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G57620 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0898
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G36300 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0519
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT3G54380 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G14160 | PredictedAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MSReconstituted Complex | FSW = 0.2409
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT5G61330 | Predictedinterologs mappinginteraction prediction | FSW = 0.0392
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT5G60340 | Predictedinteraction prediction | FSW = 0.0248
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT4G38150 | PredictedGene fusion method | FSW = 0.1882
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G74200 | PredictedGene fusion method | FSW = 0.0994
| Unknown | ATRLP16 (RECEPTOR LIKE PROTEIN 16) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454