Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G01590 - ( aldose 1-epimerase family protein )
16 Proteins interacs with AT3G01590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09200 | PredictedAffinity Capture-MSinterologs mappinginterologs mappinginterologs mappingtwo hybridAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-Westerntwo hybridCo-purificationSynthetic Lethality | FSW = 0.0311
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT1G80030 | PredictedSynthetic Lethality | FSW = 0.0162
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G64190 | PredictedSynthetic Lethality | FSW = 0.0132
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT5G47210 | PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | NUCLEAR RNA-BINDING PROTEIN PUTATIVE |
AT5G26830 | PredictedAffinity Capture-MS | FSW = 0.0900
| Unknown | THREONYL-TRNA SYNTHETASE / THREONINE--TRNA LIGASE (THRRS) |
AT4G25900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4816
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT4G25340 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0122
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0209
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT5G44030 | PredictedAffinity Capture-MSinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-WesternReconstituted Complextwo hybridAffinity Capture-MSCo-purification | FSW = 0.1341
| Unknown | CESA4 (CELLULOSE SYNTHASE A4) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G20320 | PredictedAffinity Capture-MS | FSW = 0.0561
| Unknown | CTP SYNTHASE/ CATALYTIC |
AT1G52160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2000
| Unknown | TRZ3 (TRNASE Z 3) 3-TRNA PROCESSING ENDORIBONUCLEASE/ CATALYTIC |
AT3G61610 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5217
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT4G23730 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4816
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT5G57330 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1648
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT5G14500 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6024
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454