Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G01980 - ( short-chain dehydrogenase/reductase (SDR) family protein )

15 Proteins interacs with AT3G01980
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G55290

Predicted

Phylogenetic profile method

FSW = 0.4840

Class C:

peroxisome

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G05530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7063

Class C:

peroxisome

IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) BINDING / CATALYTIC/ OXIDOREDUCTASE
AT2G47470

Predicted

Gene fusion method

FSW = 0.1032

Unknown

UNE5 (UNFERTILIZED EMBRYO SAC 5) PROTEIN DISULFIDE ISOMERASE
AT3G55310

Predicted

Phylogenetic profile method

FSW = 0.5227

Unknown

BINDING / CATALYTIC/ OXIDOREDUCTASE
AT1G07440

Predicted

Gene fusion method

Co-expression

FSW = 0.5714

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT2G29350

Predicted

Phylogenetic profile method

FSW = 0.5026

Unknown

SAG13 ALCOHOL DEHYDROGENASE/ OXIDOREDUCTASE
AT2G29340

Predicted

Phylogenetic profile method

FSW = 0.4840

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G29290

Predicted

Phylogenetic profile method

FSW = 0.4931

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT2G29150

Predicted

Phylogenetic profile method

FSW = 0.5026

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT5G06060

Predicted

Phylogenetic profile method

FSW = 0.5026

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT2G29320

Predicted

Phylogenetic profile method

FSW = 0.5227

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT2G17845

Predicted

Phylogenetic profile method

FSW = 0.5444

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G29300

Predicted

Phylogenetic profile method

FSW = 0.5227

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT2G29370

Predicted

Phylogenetic profile method

FSW = 0.5026

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT3G25210

Predicted

Gene fusion method

FSW = 0.2909

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G278001) HAS 13348 BLAST HITS TO 4225 PROTEINS IN 143 SPECIES ARCHAE - 3 BACTERIA - 6 METAZOA - 114 FUNGI - 126 PLANTS - 12736 VIRUSES - 0 OTHER EUKARYOTES - 363 (SOURCE NCBI BLINK)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454