Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02000 - ( ROXY1 disulfide oxidoreductase )
88 Proteins interacs with AT3G02000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G68640 | Experimental | FSW = 0.0293
| Unknown | PAN (PERIANTHIA) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G06950 | Experimental | FSW = 0.0532
| Unknown | AHBP-1B DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT1G77920 | Experimental | FSW = 0.0568
| Unknown | BZIP FAMILY TRANSCRIPTION FACTOR |
AT5G06960 | Experimental | FSW = 0.0892
| Unknown | OBF5 (OCS-ELEMENT BINDING FACTOR 5) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G10030 | Experimental | FSW = 0.0280
| Unknown | TGA4 (TGACG MOTIF-BINDING FACTOR 4) DNA BINDING / CALMODULIN BINDING / TRANSCRIPTION FACTOR |
AT5G65210 | Experimental | FSW = 0.1011
| Unknown | TGA1 DNA BINDING / CALMODULIN BINDING / TRANSCRIPTION FACTOR |
AT1G22070 | Experimental | FSW = 0.0592
| Unknown | TGA3 DNA BINDING / CALMODULIN BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT3G12250 | Experimental | FSW = 0.0398
| Unknown | TGA6 (TGACG MOTIF-BINDING FACTOR 6) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G27630 | Experimentalgtpase assay | FSW = 0.0489
| Unknown | GTG2 (GPCR-TYPE G PROTEIN 2) |
AT1G64990 | Experimentalgtpase assay | FSW = 0.0391
| Unknown | GTG1 (GPCR-TYPE G PROTEIN 1) |
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0258
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT1G51980 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT PUTATIVE |
AT5G09590 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1379
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.2730
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G11260 | PredictedAffinity Capture-MS | FSW = 0.1043
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.0582
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0393
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G22110 | PredictedPhenotypic Suppression | FSW = 0.0843
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G48170 | PredictedPhenotypic Enhancement | FSW = 0.0895
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.1537
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G01350 | PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING) |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.0806
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1121
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0704
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.1397
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT5G60540 | PredictedPhenotypic Suppression | FSW = 0.2542
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT2G14120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0287
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0582
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G04750 | PredictedPhenotypic Suppression | FSW = 0.1642
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G32090 | PredictedPhenotypic Enhancement | FSW = 0.0748
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.1171
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.1334
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G33090 | PredictedPhenotypic Enhancement | FSW = 0.1188
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT5G47100 | Predictedinterologs mapping | FSW = 0.0083
| Unknown | CBL9 CALCIUM ION BINDING |
AT2G37790 | PredictedPhenotypic Enhancement | FSW = 0.1586
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G70580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0872
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT4G09570 | PredictedPhenotypic Enhancement | FSW = 0.0146
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0525
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.1273
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G25340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1760
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.1156
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.1947
| Unknown | ARA6 GTP BINDING / GTPASE |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT2G05170 | PredictedPhenotypic Suppression | FSW = 0.0692
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT3G60360 | PredictedPhenotypic Enhancement | FSW = 0.1361
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.2469
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT3G06100 | PredictedSynthetic Rescue | FSW = 0.0119
| Unknown | NIP71 (NOD26-LIKE INTRINSIC PROTEIN 71) WATER CHANNEL |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.0543
| Unknown | UNKNOWN PROTEIN |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.1254
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0974
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.0609
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G37420 | PredictedPhenotypic Suppression | FSW = 0.2977
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G02100 | Predictedinterologs mapping | FSW = 0.1672
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G20693 | PredictedPhenotypic Enhancement | FSW = 0.2240
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25155 | PredictedPhenotypic Suppression | FSW = 0.1282
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G26320 | PredictedPhenotypic Enhancement | FSW = 0.1035
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G27320 | PredictedPhenotypic Enhancement | FSW = 0.0554
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G52500 | PredictedPhenotypic Enhancement | FSW = 0.1462
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G68020 | PredictedPhenotypic Suppression | FSW = 0.1980
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT2G03130 | PredictedPhenotypic Enhancement | FSW = 0.1553
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0769
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G34750 | PredictedPhenotypic Enhancement | FSW = 0.2193
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G47760 | PredictedAffinity Capture-MS | FSW = 0.1573
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.1426
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G01100 | PredictedPhenotypic Enhancement | FSW = 0.0950
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G09640 | PredictedPhenotypic Enhancement | FSW = 0.1706
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.0709
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G24010 | Predictedsynthetic growth defect | FSW = 0.0618
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.0656
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53030 | Predictedsynthetic growth defect | FSW = 0.0614
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.1313
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT3G60240 | PredictedAffinity Capture-Western | FSW = 0.0097
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.1384
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G09290 | PredictedPhenotypic Enhancement | FSW = 0.0073
| Unknown | 3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE |
AT5G13860 | PredictedPhenotypic Enhancement | FSW = 0.0464
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G14180 | PredictedSynthetic Lethality | FSW = 0.1359
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G24840 | Predictedinterologs mapping | FSW = 0.0744
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.2471
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G45620 | PredictedPhenotypic Enhancement | FSW = 0.1329
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G49970 | PredictedPhenotypic Suppression | FSW = 0.1533
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G64760 | PredictedPhenotypic Suppression | FSW = 0.2044
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT5G66640 | Predictedbiochemical | FSW = 0.0206
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.2138
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G27440 | PredictedPhenotypic Enhancement | FSW = 0.1592
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G36050 | PredictedPhenotypic Enhancement | FSW = 0.1262
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.1421
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454