Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G02040 - ( SRG3 (senescence-related gene 3) glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase )

7 Proteins interacs with AT3G02040
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G22630

Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G57160

Predicted

Affinity Capture-MS

FSW = 0.0909

Unknown

ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT2G23080

Predicted

Affinity Capture-MS

FSW = 0.0118

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G18100

Predicted

Affinity Capture-MS

FSW = 0.1025

Unknown

UNKNOWN PROTEIN
AT2G04660

Predicted

two hybrid

FSW = 0.0220

Unknown

APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G31580

Predicted

two hybrid

FSW = 0.1303

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S TRNAHIS GUANYLYLTRANSFERASE (INTERPROIPR007537) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G323201) HAS 640 BLAST HITS TO 336 PROTEINS IN 155 SPECIES ARCHAE - 65 BACTERIA - 47 METAZOA - 212 FUNGI - 176 PLANTS - 43 VIRUSES - 2 OTHER EUKARYOTES - 95 (SOURCE NCBI BLINK)
AT5G41080

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2622

Unknown

GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454