Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02090 - ( mitochondrial processing peptidase beta subunit putative )
35 Proteins interacs with AT3G02090| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G07727
   | Experimental | FSW = 0.0533
| Class A:nucleusClass B:vacuoleunclearplastidmitochondrionClass D:mitochondrion (p = 0.82) | CYTOCHROME B (MTCYB) (COB) (CYTB) |
| AT3G16890
| Experimentalco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.1161
| Unknown | PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40) |
| AT1G51980
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction predictionEnriched domain pairCo-expression | FSW = 0.0889
| Class C:vacuoleunclearplastidmitochondrion | MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT PUTATIVE |
| AT3G16480
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.0154
| Class C:vacuoleunclearmitochondrion | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
| AT1G56070
| PredictedAffinity Capture-MS | FSW = 0.0339
| Class C:vacuolenucleus | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
| AT5G67630
| PredictedAffinity Capture-MS | FSW = 0.0114
| Class C:plastidnucleus | DNA HELICASE PUTATIVE |
| AT1G18540
| PredictedAffinity Capture-MS | FSW = 0.0134
| Class C:plastid | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
| AT5G04740
| PredictedAffinity Capture-MS | FSW = 0.0275
| Class C:plastid | ACT DOMAIN-CONTAINING PROTEIN |
| AT3G52150
| Predictedtwo hybrid | FSW = 0.0105
| Class C:plastid | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G26160
| PredictedAffinity Capture-MS | FSW = 0.0117
| Class C:plastid | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
| AT3G48930
| Predictedbiochemical | FSW = 0.0084
| Class C:nucleus | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G14170
| Predictedtwo hybridtwo hybrid | FSW = 0.0142
| Class C:nucleus | CHC1 |
| AT1G74060
| PredictedAffinity Capture-MS | FSW = 0.0145
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT4G25630
| PredictedSynthetic Lethality | FSW = 0.0023
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT4G30220
| PredictedAffinity Capture-MS | FSW = 0.0070
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT4G10040
| Predictedin vitroAffinity Capture-MS | FSW = 0.0105
| Class C:mitochondrion | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
| AT5G05670
| PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
| AT2G46170
| PredictedAffinity Capture-MSin vivotwo hybrid | FSW = 0.0421
| Unknown | RETICULON FAMILY PROTEIN (RTNLB5) |
| AT3G53870
| Predictedbiochemical | FSW = 0.0068
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT5G25754 | Predictedtwo hybridtwo hybrid | FSW = 0.0132
| Unknown | UNKNOWN PROTEIN |
| AT2G38960
| Predictedbiochemical | FSW = 0.0050
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
| AT3G27530
| Predictedtwo hybrid | FSW = 0.0057
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
| AT3G48470
| PredictedPhenotypic Enhancement | FSW = 0.0103
| Unknown | EMB2423 (EMBRYO DEFECTIVE 2423) |
| AT4G31290
| Predictedtwo hybridtwo hybrid | FSW = 0.0239
| Unknown | CHAC-LIKE FAMILY PROTEIN |
| AT5G09230
| Predictedtwo hybridtwo hybrid | FSW = 0.0120
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
| AT5G22840
| Predictedtwo hybrid | FSW = 0.0364
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G03240
| Predictedin vitrotwo hybrid | FSW = 0.0281
| Unknown | FH (FRATAXIN HOMOLOG) |
| AT1G03360
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0318
| Unknown | ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA BINDING / EXONUCLEASE |
| AT2G17510
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0254
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
| AT3G06470
| Predictedbiochemical | FSW = 0.0042
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
| AT3G44590
| Predictedco-fractionationCo-fractionation | FSW = 0.0140
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
| AT5G66640
| Predictedbiochemical | FSW = 0.0097
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
| AT5G48600
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Unknown | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER |
| AT3G44850
| Predictedtwo hybrid | FSW = 0.0696
| Unknown | PROTEIN KINASE-RELATED |
| AT5G16420
| PredictedGene fusion method | FSW = 0.0248
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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