Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02200 - ( proteasome family protein )

14 Proteins interacs with AT3G02200
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G01610

Predicted

two hybrid

FSW = 0.0909

Unknown

CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE
AT5G25780

Predicted

Affinity Capture-MS

FSW = 0.0526

Unknown

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT5G08570

Predicted

two hybrid

FSW = 0.0248

Unknown

PYRUVATE KINASE PUTATIVE
AT4G11420

Predicted

Affinity Capture-MS

FSW = 0.1409

Unknown

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT3G57290

Predicted

Affinity Capture-MS

FSW = 0.2874

Unknown

EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR
AT2G39990

Predicted

two hybrid

two hybrid

Affinity Capture-MS

Co-expression

FSW = 0.2742

Unknown

EIF2 TRANSLATION INITIATION FACTOR
AT3G23580

Predicted

two hybrid

FSW = 0.0336

Unknown

RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT5G64390

Predicted

two hybrid

FSW = 0.0529

Unknown

HEN4 (HUA ENHANCER 4) RNA BINDING / NUCLEIC ACID BINDING
AT5G42970

Predicted

two hybrid

Co-expression

FSW = 0.0822

Unknown

COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING
AT5G46190

Predicted

two hybrid

FSW = 0.0209

Unknown

KH DOMAIN-CONTAINING PROTEIN
AT1G10840

Predicted

Affinity Capture-MS

FSW = 0.2381

Unknown

TIF3H1 TRANSLATION INITIATION FACTOR
AT2G46290

Predicted

Affinity Capture-MS

FSW = 0.1604

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE
AT1G71696

Predicted

two hybrid

FSW = 0.2500

Unknown

SOL1 (SUPPRESSOR OF LLP1 1) CARBOXYPEPTIDASE/ METALLOCARBOXYPEPTIDASE/ ZINC ION BINDING
AT5G15610

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4689

Unknown

PROTEASOME FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454