Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02300 - ( regulator of chromosome condensation (RCC1) family protein )
13 Proteins interacs with AT3G02300Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63110 | PredictedGene fusion method | FSW = 0.0320
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT3G58760 | PredictedGene fusion method | FSW = 0.4444
| Unknown | ANKYRIN PROTEIN KINASE PUTATIVE |
AT1G03930 | PredictedGene fusion method | FSW = 0.0480
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G08720 | PredictedGene fusion method | FSW = 0.1636
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT3G52660 | PredictedGene fusion method | FSW = 0.3951
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G56180 | PredictedGene fusion method | FSW = 0.3951
| Unknown | ATARP8 (ACTIN-RELATED PROTEIN 8) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G18330 | PredictedGene fusion method | FSW = 0.2735
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 PUTATIVE / EIF2S3 PUTATIVE / EIF-2-GAMMA PUTATIVE |
AT2G33070 | PredictedGene fusion method | FSW = 0.2896
| Unknown | NSP2 (NITRILE SPECIFIER PROTEIN 2) |
AT4G33080 | PredictedGene fusion method | FSW = 0.1422
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G17080 | PredictedGene fusion method | FSW = 0.5263
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MORN MOTIF (INTERPROIPR003409) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MORN (MEMBRANE OCCUPATION AND RECOGNITION NEXUS) REPEAT-CONTAINING PROTEIN /PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE-RELATED (TAIRAT2G351701) HAS 18005 BLAST HITS TO 5199 PROTEINS IN 343 SPECIES ARCHAE - 0 BACTERIA - 1726 METAZOA - 3046 FUNGI - 93 PLANTS - 653 VIRUSES - 0 OTHER EUKARYOTES - 12487 (SOURCE NCBI BLINK) |
AT3G26500 | PredictedGene fusion method | FSW = 0.5714
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT1G53330 | PredictedGene fusion method | FSW = 1.0000
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G49450 | PredictedGene fusion method | FSW = 0.1498
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454