Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02320 - ( RNA binding / tRNA (guanine-N2-)-methyltransferase )
32 Proteins interacs with AT3G02320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G17360 | PredictedSynthetic Lethality | FSW = 0.0529
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0170
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G37870 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternColocalization | FSW = 0.0641
| Unknown | PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
AT4G01370 | Predictedbiochemical | FSW = 0.0097
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT3G22890 | PredictedSynthetic Lethality | FSW = 0.1399
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G09660 | PredictedSynthetic Lethality | FSW = 0.1465
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G74710 | PredictedSynthetic Lethality | FSW = 0.1242
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0086
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT2G17520 | Predictedbiochemical | FSW = 0.0109
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT2G45490 | Predictedbiochemical | FSW = 0.0091
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT4G10040 | PredictedCo-crystal Structureinterologs mapping | FSW = 0.0839
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT1G22270 | Predictedsynthetic growth defect | FSW = 0.0909
| Unknown | UNKNOWN PROTEIN |
AT1G78770 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0972
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G25155 | PredictedSynthetic Lethality | FSW = 0.1043
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.2028
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G47830 | PredictedSynthetic Lethality | FSW = 0.1765
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT3G01090 | Predictedbiochemical | FSW = 0.0219
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G06470 | PredictedPhenotypic Enhancement | FSW = 0.0255
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G22290 | PredictedSynthetic Lethality | FSW = 0.1663
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.1482
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G45240 | Predictedsynthetic growth defect | FSW = 0.2793
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT4G21490 | PredictedSynthetic Lethality | FSW = 0.1700
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G29580 | PredictedSynthetic Lethality | FSW = 0.2013
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT4G32720 | Predictedsynthetic growth defect | FSW = 0.0278
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
AT5G16980 | PredictedSynthetic Lethality | FSW = 0.2028
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G17860 | PredictedSynthetic Lethality | FSW = 0.1917
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.1083
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT3G26410 | Predictedsynthetic growth defectCo-expression | FSW = 0.1667
| Unknown | METHYLTRANSFERASE/ NUCLEIC ACID BINDING |
AT4G19880 | Predictedinterologs mapping | FSW = 0.0801
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454