Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02510 - ( regulator of chromosome condensation (RCC1) family protein )
21 Proteins interacs with AT3G02510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G08710 | PredictedAffinity Capture-Western | FSW = 0.0113
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G58810 | PredictedGene fusion method | FSW = 0.1440
| Unknown | MTPA2 (METAL TOLERANCE PROTEIN A2) EFFLUX TRANSMEMBRANE TRANSPORTER/ INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0069
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G30200 | PredictedGene fusion method | FSW = 0.0324
| Unknown | [ACYL-CARRIER-PROTEIN] S-MALONYLTRANSFERASE/ BINDING / CATALYTIC/ TRANSFERASE |
AT1G10070 | PredictedAffinity Capture-Western | FSW = 0.0180
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G11060 | PredictedGene fusion method | FSW = 0.0392
| Unknown | KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G24180 | PredictedGene fusion method | FSW = 0.0278
| Unknown | IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT5G66160 | PredictedGene fusion method | FSW = 0.1333
| Unknown | JR700 PEPTIDASE/ PROTEIN BINDING / ZINC ION BINDING |
AT1G80510 | PredictedAffinity Capture-Western | FSW = 0.0741
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G19510 | PredictedAffinity Capture-Western | FSW = 0.0385
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT3G59790 | PredictedGene fusion method | FSW = 0.0432
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT1G73500 | PredictedGene fusion method | FSW = 0.0896
| Unknown | MKK9 (MAP KINASE KINASE 9) MAP KINASE KINASE/ KINASE/ PROTEIN KINASE ACTIVATOR |
AT1G53820 | PredictedGene fusion method | FSW = 0.0315
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G34560 | PredictedGene fusion method | FSW = 0.0324
| Unknown | KATANIN PUTATIVE |
AT3G46160 | PredictedGene fusion method | FSW = 0.1667
| Unknown | PROTEIN KINASE-RELATED |
AT1G47490 | PredictedGene fusion method | FSW = 0.0303
| Unknown | ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING |
AT3G45220 | PredictedGene fusion method | FSW = 0.0833
| Unknown | SERPIN PUTATIVE / SERINE PROTEASE INHIBITOR PUTATIVE |
AT3G12100 | PredictedGene fusion method | FSW = 0.2400
| Unknown | CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE |
AT3G09010 | PredictedGene fusion method | FSW = 0.1111
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G06750 | PredictedGene fusion method | FSW = 0.1333
| Unknown | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454