Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02510 - ( regulator of chromosome condensation (RCC1) family protein )

21 Proteins interacs with AT3G02510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G08710

Predicted

Affinity Capture-Western

FSW = 0.0113

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT3G58810

Predicted

Gene fusion method

FSW = 0.1440

Unknown

MTPA2 (METAL TOLERANCE PROTEIN A2) EFFLUX TRANSMEMBRANE TRANSPORTER/ INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0069

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G30200

Predicted

Gene fusion method

FSW = 0.0324

Unknown

[ACYL-CARRIER-PROTEIN] S-MALONYLTRANSFERASE/ BINDING / CATALYTIC/ TRANSFERASE
AT1G10070

Predicted

Affinity Capture-Western

FSW = 0.0180

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G11060

Predicted

Gene fusion method

FSW = 0.0392

Unknown

KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G24180

Predicted

Gene fusion method

FSW = 0.0278

Unknown

IAR4 OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT5G66160

Predicted

Gene fusion method

FSW = 0.1333

Unknown

JR700 PEPTIDASE/ PROTEIN BINDING / ZINC ION BINDING
AT1G80510

Predicted

Affinity Capture-Western

FSW = 0.0741

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT4G04700

Predicted

Affinity Capture-MS

FSW = 0.0124

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G19510

Predicted

Affinity Capture-Western

FSW = 0.0385

Unknown

ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2)
AT3G59790

Predicted

Gene fusion method

FSW = 0.0432

Unknown

ATMPK10 MAP KINASE/ KINASE
AT1G73500

Predicted

Gene fusion method

FSW = 0.0896

Unknown

MKK9 (MAP KINASE KINASE 9) MAP KINASE KINASE/ KINASE/ PROTEIN KINASE ACTIVATOR
AT1G53820

Predicted

Gene fusion method

FSW = 0.0315

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G34560

Predicted

Gene fusion method

FSW = 0.0324

Unknown

KATANIN PUTATIVE
AT3G46160

Predicted

Gene fusion method

FSW = 0.1667

Unknown

PROTEIN KINASE-RELATED
AT1G47490

Predicted

Gene fusion method

FSW = 0.0303

Unknown

ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING
AT3G45220

Predicted

Gene fusion method

FSW = 0.0833

Unknown

SERPIN PUTATIVE / SERINE PROTEASE INHIBITOR PUTATIVE
AT3G12100

Predicted

Gene fusion method

FSW = 0.2400

Unknown

CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE
AT3G09010

Predicted

Gene fusion method

FSW = 0.1111

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G06750

Predicted

Gene fusion method

FSW = 0.1333

Unknown

PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454