Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02570 - ( MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) mannose-6-phosphate isomerase )
12 Proteins interacs with AT3G02570| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G20020
   | Predictedtwo hybrid | FSW = 0.0159
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT5G64050
| Predictedpull down | FSW = 0.0711
| Unknown | ERS (GLUTAMATE TRNA SYNTHETASE) GLUTAMATE-TRNA LIGASE |
| AT3G60750
| Predictedtwo hybrid | FSW = 0.2215
| Unknown | TRANSKETOLASE PUTATIVE |
| AT5G22500
| Predictedtwo hybrid | FSW = 0.0529
| Unknown | FAR1 (FATTY ACID REDUCTASE 1) FATTY ACYL-COA REDUCTASE (ALCOHOL-FORMING)/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| ATCG00830 | Predictedpull down | FSW = 0.0094
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
| AT4G34460
| Predictedtwo hybrid | FSW = 0.0296
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G45380
| Predictedpull down | FSW = 0.0218
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
| AT5G40760
| Predictedpull down | FSW = 0.0938
| Unknown | G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
| AT1G32380
| Predictedpull down | FSW = 0.0267
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 2 (PRS2) |
| AT3G56840
| Predictedpull down | FSW = 0.0462
| Unknown | FAD-DEPENDENT OXIDOREDUCTASE FAMILY PROTEIN |
| AT4G19880
| Predictedpull down | FSW = 0.0148
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
| AT1G67070
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2092
| Unknown | DIN9 (DARK INDUCIBLE 9) MANNOSE-6-PHOSPHATE ISOMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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