Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02740 - ( aspartyl protease family protein )
23 Proteins interacs with AT3G02740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G42580 | Experimentalphage display | FSW = 0.0150
| Unknown | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) BINDING / PROTEIN BINDING |
AT1G65240 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0392
| Class C:plasma membrane | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G16340 | PredictedAffinity Capture-MS | FSW = 0.0324
| Class C:plasma membrane | PDR1 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G33090 | PredictedPhenotypic Enhancement | FSW = 0.0290
| Class C:plasma membrane | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT1G26630 | PredictedAffinity Capture-MS | FSW = 0.0606
| Class C:plasma membrane | FBR12 (FUMONISIN B1-RESISTANT12) TRANSLATION INITIATION FACTOR |
AT3G62870 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0184
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | PredictedPhenotypic Enhancement | FSW = 0.0195
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT4G33650 | Predictedtwo hybrid | FSW = 0.0332
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT3G48170 | PredictedPhenotypic Enhancement | FSW = 0.0811
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G14320 | PredictedPhenotypic Enhancement | FSW = 0.0199
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT1G30000 | PredictedSynthetic RescueReconstituted ComplexAffinity Capture-Western | FSW = 0.2400
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT3G54840 | PredictedPhenotypic SuppressionSynthetic Rescue | FSW = 0.1009
| Unknown | ARA6 GTP BINDING / GTPASE |
AT1G34580 | PredictedAffinity Capture-MStwo hybridAffinity Capture-Westernbiochemical | FSW = 0.0544
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G67300 | PredictedAffinity Capture-MS | FSW = 0.0788
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
AT3G16840 | PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-purification | FSW = 0.0901
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G18660 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.0773
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.0316
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G13700 | PredictedAffinity Capture-WesternAffinity Capture-MSCo-purification | FSW = 0.2258
| Unknown | ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1) FAD BINDING / POLYAMINE OXIDASE |
AT5G26250 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternSynthetic RescueAffinity Capture-MStwo hybridReconstituted ComplexCo-purification | FSW = 0.1627
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G27440 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-Western | FSW = 0.1327
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G36050 | PredictedAffinity Capture-Western | FSW = 0.0571
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G53940 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-Western | FSW = 0.1189
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G51360 | PredictedGene fusion methodCo-expression | FSW = 0.1231
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454