Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03490 - ( PEX19-1 (peroxin 19-1) )
32 Proteins interacs with AT3G03490| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G26350
   | Experimentalpull down | FSW = 0.1943
| Class A:peroxisomeClass B:endoplasmic reticulumcytosolClass D:nucleus (p = 0.78) | PEX10 PROTEIN BINDING / ZINC ION BINDING |
| AT3G07560
| Experimentalinteraction detection method | FSW = 0.0455
| Class A:peroxisomeClass B:cytosolClass D:nucleus (p = 0.78) | PEX13 (PEROXIN 13) PROTEIN BINDING |
| AT1G11910
| Experimental | FSW = 0.0183
| Class B:vacuoleperoxisome | ASPARTYL PROTEASE FAMILY PROTEIN |
| AT1G26260
| Experimental | FSW = 0.0327
| Class B:peroxisomenucleusClass D:nucleus (p = 0.78) | CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G30400
| Experimental | FSW = 0.0286
| Unknown | OFP2 (OVATE FAMILY PROTEIN 2) |
| AT1G06920
| Experimental | FSW = 0.0286
| Unknown | OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4) |
| AT1G05420
| Experimental | FSW = 0.0571
| Unknown | OFP12 (OVATE FAMILY PROTEIN 12) |
| AT1G79960
| Experimental | FSW = 0.0762
| Unknown | OFP14 (OVATE FAMILY PROTEIN 14) |
| AT1G16970
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0067
| Class C:peroxisome | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
| AT1G79810
| Predictedtwo hybridtwo hybrid | FSW = 0.1922
| Class C:peroxisome | TED3 (REVERSAL OF THE DET PHENOTYPE 3) PROTEIN BINDING / ZINC ION BINDING |
| AT3G04460
| Predictedtwo hybridinteraction prediction | FSW = 0.0675
| Class C:peroxisome | PEX12 PROTEIN BINDING / ZINC ION BINDING |
| AT5G56290
| Predictedtwo hybridinteraction prediction | FSW = 0.0778
| Class C:peroxisome | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
| AT3G48560
| PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) ACETOLACTATE SYNTHASE/ PYRUVATE DECARBOXYLASE |
| AT3G01610
| PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G17880
| Predictedtwo hybrid | FSW = 0.0169
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE |
| AT4G17270
| Predictedinteraction prediction | FSW = 0.0526
| Unknown | MO25 FAMILY PROTEIN |
| AT5G57015
| Predictedinteraction prediction | FSW = 0.0047
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G03930
| PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
| AT1G24310
| Predictedtwo hybridinteraction prediction | FSW = 0.0376
| Unknown | UNKNOWN PROTEIN |
| AT1G55520
| PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
| AT2G13540
| Predictedtwo hybrid | FSW = 0.0254
| Unknown | ABH1 (ABA HYPERSENSITIVE 1) RNA CAP BINDING |
| AT5G09250
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0625
| Unknown | KIWI DNA BINDING / PROTEIN BINDING / TRANSCRIPTION COACTIVATOR |
| AT2G34750
| Predictedtwo hybridtwo hybrid | FSW = 0.0059
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
| AT3G44550
| Predictedtwo hybridtwo hybrid | FSW = 0.0250
| Unknown | FAR5 (FATTY ACID REDUCTASE 5) BINDING / CATALYTIC/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT2G03410
| PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | MO25 FAMILY PROTEIN |
| AT2G23420
| Predictedsynthetic growth defect | FSW = 0.0284
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| AT1G27330
| Predictedtwo hybrid | FSW = 0.0508
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO OXIDATIVE STRESS LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S RIBOSOME ASSOCIATED MEMBRANE RAMP4 (INTERPROIPR010580) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G273501) HAS 267 BLAST HITS TO 267 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 183 FUNGI - 0 PLANTS - 55 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
| AT4G39520
| Predictedtwo hybridinteraction prediction | FSW = 0.0269
| Unknown | GTP-BINDING PROTEIN PUTATIVE |
| AT3G03110
| Predictedtwo hybridinteraction prediction | FSW = 0.0219
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
| AT1G18940
| Predictedtwo hybrid | FSW = 0.0914
| Unknown | NODULIN FAMILY PROTEIN |
| AT5G15770
| Predictedinteraction prediction | FSW = 0.0270
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
| AT1G04080
| Predictedinteraction prediction | FSW = 0.0352
| Unknown | PRP39 BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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