Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03600 - ( RPS2 (RIBOSOMAL PROTEIN S2) structural constituent of ribosome )

35 Proteins interacs with AT3G03600
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G25070

Experimental

Affinity Capture-Western

FSW = 0.0245

Class B:

vacuole

plasma membrane

mitochondrion

RIN4 (RPM1 INTERACTING PROTEIN 4) PROTEIN BINDING
AT5G47320

Predicted

interaction prediction

FSW = 0.0224

Class C:

mitochondrion

RPS19 (RIBOSOMAL PROTEIN S19) RNA BINDING
AT1G15870

Predicted

Affinity Capture-MS

FSW = 0.0762

Class C:

mitochondrion

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN
AT2G34520

Predicted

Affinity Capture-MS

FSW = 0.0839

Class C:

mitochondrion

RPS14 (MITOCHONDRIAL RIBOSOMAL PROTEIN S14) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G17560

Predicted

Affinity Capture-MS

FSW = 0.0421

Class C:

mitochondrion

HLL (HUELLENLOS) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G13850

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1778

Class C:

mitochondrion

GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) ATP BINDING / RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING
AT5G39800

Predicted

Affinity Capture-MS

FSW = 0.0234

Class C:

mitochondrion

60S RIBOSOMAL PROTEIN-RELATED
AT3G59650

Predicted

Affinity Capture-MS

FSW = 0.0515

Class C:

mitochondrion

MITOCHONDRIAL RIBOSOMAL PROTEIN L51/S25/CI-B8 FAMILY PROTEIN
AT2G07675

Predicted

Affinity Capture-MS

FSW = 0.1333

Class C:

mitochondrion

RIBOSOMAL PROTEIN S12 MITOCHONDRIAL FAMILY PROTEIN
AT4G34620

Predicted

Affinity Capture-MS

FSW = 0.1265

Unknown

SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G40950

Predicted

Affinity Capture-MS

FSW = 0.0841

Unknown

RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G29900

Predicted

Affinity Capture-MS

FSW = 0.0070

Unknown

CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT1G74970

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3232

Unknown

RPS9 (RIBOSOMAL PROTEIN S9) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G54210

Predicted

Affinity Capture-MS

FSW = 0.0504

Unknown

RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
AT1G78630

Predicted

Affinity Capture-MS

FSW = 0.0254

Unknown

EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G05190

Predicted

Affinity Capture-MS

FSW = 0.0390

Unknown

EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G10050

Predicted

interaction prediction

two hybrid

FSW = 0.0225

Unknown

OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE
AT4G34460

Predicted

two hybrid

interaction prediction

FSW = 0.0121

Unknown

AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0063

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G11420

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT3G04820

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0385

Unknown

PSEUDOURIDINE SYNTHASE
AT2G42520

Predicted

Affinity Capture-MS

FSW = 0.0215

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT3G02990

Predicted

two hybrid

FSW = 0.0526

Unknown

ATHSFA1E DNA BINDING / TRANSCRIPTION FACTOR
AT1G46264

Predicted

interaction prediction

FSW = 0.0702

Unknown

AT-HSFB4 DNA BINDING / TRANSCRIPTION FACTOR
AT1G04170

Predicted

Affinity Capture-MS

FSW = 0.0276

Unknown

EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G27620

Predicted

Affinity Capture-MS

FSW = 0.0063

Unknown

CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT2G30650

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1455

Unknown

CATALYTIC
AT1G49400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2017

Unknown

EMB1129 (EMBRYO DEFECTIVE 1129) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G15810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3130

Unknown

RIBOSOMAL PROTEIN S15 FAMILY PROTEIN
AT1G64600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.2558

Unknown

COPPER ION BINDING / METHYLTRANSFERASE
AT2G42710

Predicted

Affinity Capture-MS

FSW = 0.0468

Unknown

RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT1G14620

Predicted

Affinity Capture-MS

FSW = 0.1016

Unknown

DECOY (DECOY)
AT5G67320

Predicted

two hybrid

interaction prediction

FSW = 0.0058

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT1G01910

Predicted

two hybrid

interaction prediction

FSW = 0.0168

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE
AT2G30660

Predicted

interaction prediction

FSW = 0.1823

Unknown

3-HYDROXYISOBUTYRYL-COENZYME A HYDROLASE PUTATIVE / COA-THIOESTER HYDROLASE PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454