Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03600 - ( RPS2 (RIBOSOMAL PROTEIN S2) structural constituent of ribosome )
35 Proteins interacs with AT3G03600| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G25070
   | ExperimentalAffinity Capture-Western | FSW = 0.0245
| Class B:vacuoleplasma membranemitochondrion | RIN4 (RPM1 INTERACTING PROTEIN 4) PROTEIN BINDING |
| AT5G47320
| Predictedinteraction prediction | FSW = 0.0224
| Class C:mitochondrion | RPS19 (RIBOSOMAL PROTEIN S19) RNA BINDING |
| AT1G15870
| PredictedAffinity Capture-MS | FSW = 0.0762
| Class C:mitochondrion | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
| AT2G34520
| PredictedAffinity Capture-MS | FSW = 0.0839
| Class C:mitochondrion | RPS14 (MITOCHONDRIAL RIBOSOMAL PROTEIN S14) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G17560
| PredictedAffinity Capture-MS | FSW = 0.0421
| Class C:mitochondrion | HLL (HUELLENLOS) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G13850
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1778
| Class C:mitochondrion | GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) ATP BINDING / RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING |
| AT5G39800
| PredictedAffinity Capture-MS | FSW = 0.0234
| Class C:mitochondrion | 60S RIBOSOMAL PROTEIN-RELATED |
| AT3G59650
| PredictedAffinity Capture-MS | FSW = 0.0515
| Class C:mitochondrion | MITOCHONDRIAL RIBOSOMAL PROTEIN L51/S25/CI-B8 FAMILY PROTEIN |
| AT2G07675
| PredictedAffinity Capture-MS | FSW = 0.1333
| Class C:mitochondrion | RIBOSOMAL PROTEIN S12 MITOCHONDRIAL FAMILY PROTEIN |
| AT4G34620
| PredictedAffinity Capture-MS | FSW = 0.1265
| Unknown | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G40950
| PredictedAffinity Capture-MS | FSW = 0.0841
| Unknown | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G29900
| PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
| AT1G74970
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3232
| Unknown | RPS9 (RIBOSOMAL PROTEIN S9) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G54210
| PredictedAffinity Capture-MS | FSW = 0.0504
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
| AT1G78630
| PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G05190
| PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G10050
| Predictedinteraction predictiontwo hybrid | FSW = 0.0225
| Unknown | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
| AT4G34460
| Predictedtwo hybridinteraction prediction | FSW = 0.0121
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G52640
| PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT4G11420
| PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
| AT3G04820
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0385
| Unknown | PSEUDOURIDINE SYNTHASE |
| AT2G42520
| PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT3G02990
| Predictedtwo hybrid | FSW = 0.0526
| Unknown | ATHSFA1E DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G46264
| Predictedinteraction prediction | FSW = 0.0702
| Unknown | AT-HSFB4 DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G04170
| PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT5G27620
| PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT2G30650
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1455
| Unknown | CATALYTIC |
| AT1G49400
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2017
| Unknown | EMB1129 (EMBRYO DEFECTIVE 1129) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G15810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3130
| Unknown | RIBOSOMAL PROTEIN S15 FAMILY PROTEIN |
| AT1G64600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.2558
| Unknown | COPPER ION BINDING / METHYLTRANSFERASE |
| AT2G42710
| PredictedAffinity Capture-MS | FSW = 0.0468
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
| AT1G14620
| PredictedAffinity Capture-MS | FSW = 0.1016
| Unknown | DECOY (DECOY) |
| AT5G67320
| Predictedtwo hybridinteraction prediction | FSW = 0.0058
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
| AT1G01910
| Predictedtwo hybridinteraction prediction | FSW = 0.0168
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
| AT2G30660
| Predictedinteraction prediction | FSW = 0.1823
| Unknown | 3-HYDROXYISOBUTYRYL-COENZYME A HYDROLASE PUTATIVE / COA-THIOESTER HYDROLASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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