Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03710 - ( RIF10 (resistant to inhibition with FSM 10) 3-5-exoribonuclease/ RNA binding / nucleic acid binding / polyribonucleotide nucleotidyltransferase )
27 Proteins interacs with AT3G03710| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G33800
   | Predictedpull down | FSW = 0.2733
| Class C:plastid | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
| AT3G63490
| Predictedpull down | FSW = 0.2771
| Class C:plastid | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
| AT1G56190
| Predictedpull down | FSW = 0.0842
| Class C:plastid | PHOSPHOGLYCERATE KINASE PUTATIVE |
| AT2G04270
| Predictedmass spectrometry studies of complexes | FSW = 0.5037
| Class C:plastid | RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE |
| AT3G44890
| Predictedpull down | FSW = 0.1778
| Class C:plastid | RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G01310
| Predictedpull down | FSW = 0.2240
| Class C:plastid | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
| AT1G79050
| Predictedpull down | FSW = 0.1250
| Class C:plastid | DNA REPAIR PROTEIN RECA |
| AT5G14320
| Predictedpull down | FSW = 0.1895
| Class C:plastid | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
| AT1G05190
| Predictedpull down | FSW = 0.1580
| Class C:plastid | EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G78630
| Predictedpull down | FSW = 0.2828
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
| ATCG00380 | Predictedpull down | FSW = 0.2492
| Class C:plastid | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
| ATCG00740 | Predictedpull down | FSW = 0.4727
| Class C:plastid | RNA POLYMERASE ALPHA SUBUNIT |
| ATCG00800 | Predictedpull down | FSW = 0.2290
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG00810 | Predictedpull down | FSW = 0.0770
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG00820 | Predictedpull down | FSW = 0.3092
| Class C:plastid | ENCODES A 68-KDA PROTEIN OF THE SMALL RIBOSOMAL SUBUNIT |
| ATCG00830 | Predictedpull down | FSW = 0.2363
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG01240 | Predictedpull down | FSW = 0.2171
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
| AT2G36530
| Predictedpull down | FSW = 0.0614
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
| AT2G36880
| Predictedpull down | FSW = 0.0332
| Unknown | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
| AT4G38680
| Predictedpull down | FSW = 0.3834
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
| AT4G30930
| Predictedpull down | FSW = 0.1514
| Unknown | NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G80620
| Predictedpull down | FSW = 0.3232
| Unknown | RIBOSOMAL PROTEIN S15 FAMILY PROTEIN |
| AT2G20060
| Predictedpull down | FSW = 0.2935
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
| AT1G63680
| Predictedpull down | FSW = 0.0444
| Unknown | MURE ATP BINDING / ACID-AMINO ACID LIGASE/ LIGASE |
| AT5G23535
| Predictedpull down | FSW = 0.1460
| Unknown | KOW DOMAIN-CONTAINING PROTEIN |
| AT5G64650
| Predictedpull down | FSW = 0.2322
| Unknown | RIBOSOMAL PROTEIN L17 FAMILY PROTEIN |
| AT5G64670
| Predictedpull down | FSW = 0.1619
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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