Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03773 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown CONTAINS InterPro DOMAIN/s CS domain (InterProIPR007052) HSP20-like chaperone (InterProIPR008978) CS (InterProIPR017447) BEST Arabidopsis thaliana protein match is glycine-rich protein (TAIRAT4G024502) Has 482 Blast hits to 482 proteins in 157 species Archae - 0 Bacteria - 0 Metazoa - 241 Fungi - 87 Plants - 64 Viruses - 0 Other Eukaryotes - 90 (source NCBI BLink) )

6 Proteins interacs with AT3G03773
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G19830

Predicted

Co-purification

FSW = 0.1385

Unknown

 AMINOACYL-TRNA HYDROLASE
AT1G17810

Predicted

Phenotypic Enhancement

FSW = 0.0515

Unknown

 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT3G51895

Predicted

biochemical

FSW = 0.0889

Unknown

 SULTR31 (SULFATE TRANSPORTER 31) SECONDARY ACTIVE SULFATE TRANSMEMBRANE TRANSPORTER/ SULFATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT2G18230

Predicted

two hybrid

FSW = 0.0330

Unknown

 ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G09700

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.2645

Unknown

 DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT3G62770

Predicted

Affinity Capture-MS

FSW = 0.0281

Unknown

 ATATG18A

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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