Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03800 - ( SYP131 (SYNTAXIN OF PLANTS 131) SNAP receptor )
21 Proteins interacs with AT3G03800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0145
| Class C:plasma membranecytosol | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G33120 | PredictedAffinity Capture-WesternAffinity Capture-Westerninterologs mapping | FSW = 0.0469
| Class C:plasma membrane | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT1G12360 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridinterologs mapping | FSW = 0.0970
| Class C:plasma membrane | KEU (KEULE) PROTEIN TRANSPORTER |
AT1G59820 | PredictedPhenotypic Enhancement | FSW = 0.1040
| Class C:plasma membrane | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT5G23630 | PredictedPhenotypic Suppression | FSW = 0.0638
| Class C:plasma membrane | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT4G03330 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1111
| Class C:plasma membrane | SYP123 (SYNTAXIN OF PLANTS 123) SNAP RECEPTOR |
AT4G35020 | Predictedinterologs mapping | FSW = 0.0635
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT4G01320 | PredictedPhenotypic Enhancement | FSW = 0.0487
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT1G67730 | PredictedPhenotypic Enhancement | FSW = 0.0432
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G69640 | PredictedPhenotypic Enhancement | FSW = 0.2188
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT2G01600 | Predictedtwo hybrid | FSW = 0.0277
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT1G21170 | Predictedinterologs mapping | FSW = 0.1429
| Unknown | SEC5B |
AT1G50030 | Predictedco-fractionationCo-fractionation | FSW = 0.0277
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT1G57600 | PredictedPhenotypic Suppression | FSW = 0.0980
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT2G34770 | PredictedPhenotypic Enhancement | FSW = 0.0559
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G06460 | PredictedPhenotypic Enhancement | FSW = 0.0612
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G56640 | Predictedinterologs mapping | FSW = 0.1004
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT4G22540 | PredictedPhenotypic Enhancement | FSW = 0.1296
| Unknown | ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) OXYSTEROL BINDING / PHOSPHOINOSITIDE BINDING |
AT5G13150 | Predictedinterologs mapping | FSW = 0.1224
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0501
| Unknown | ORMDL FAMILY PROTEIN |
AT5G45900 | Predictedtwo hybrid | FSW = 0.0626
| Unknown | APG7 (AUTOPHAGY 7) APG8 ACTIVATING ENZYME |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454