Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03950 - ( protein binding )
23 Proteins interacs with AT3G03950Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G17510 | Experimentaltwo hybridaffinity technologypull downReconstituted Complex | FSW = 0.0410
| Unknown | CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING |
AT5G67500 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT1G71860 | PredictedPhenotypic Suppression | FSW = 0.0185
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT5G63680 | Predictedinterologs mappinginterologs mapping | FSW = 0.0375
| Unknown | PYRUVATE KINASE PUTATIVE |
AT4G22120 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-MSco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.0411
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT2G44690 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | ARAC9 GTP BINDING |
AT3G56760 | Predictedinterologs mapping | FSW = 0.0672
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT3G53870 | PredictedPhenotypic Suppression | FSW = 0.0452
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT5G48545 | Predictedinterologs mapping | FSW = 0.1270
| Unknown | HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN |
AT2G41380 | Predictedinterologs mapping | FSW = 0.0346
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G50110 | Predictedtwo hybrid | FSW = 0.0417
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
AT4G13090 | Predictedtwo hybrid | FSW = 0.0667
| Unknown | XYLOGLUCANXYLOGLUCOSYL TRANSFERASE PUTATIVE / XYLOGLUCAN ENDOTRANSGLYCOSYLASE PUTATIVE / ENDO-XYLOGLUCAN TRANSFERASE PUTATIVE |
AT2G15230 | Predictedtwo hybridReconstituted Complex | FSW = 0.0237
| Unknown | ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE |
AT1G15440 | Predictedtwo hybrid | FSW = 0.0106
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G31170 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT3G45740 | PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | HYDROLASE FAMILY PROTEIN / HAD-SUPERFAMILY PROTEIN |
AT3G54490 | Predictedtwo hybrid | FSW = 0.0342
| Unknown | RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT E) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G60340 | Predictedtwo hybrid | FSW = 0.0303
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT5G66630 | Predictedinterologs mappingAffinity Capture-Westerntwo hybrid | FSW = 0.0784
| Unknown | DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING |
AT3G47120 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G50960 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING |
AT5G37350 | Predictedtwo hybrid | FSW = 0.0667
| Unknown | RIO1 FAMILY PROTEIN |
AT1G09810 | PredictedGene fusion methodCo-expression | FSW = 0.0362
| Unknown | ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454