Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G03960 - ( chaperonin putative )
28 Proteins interacs with AT3G03960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G35470 | PredictedGene fusion method | FSW = 0.0737
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT3G18140 | Predictedinterologs mapping | FSW = 0.1184
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G19980 | Predictedinterologs mapping | FSW = 0.0338
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G45300 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0260
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G48860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0280
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT3G18190 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3879
| Unknown | CHAPERONIN PUTATIVE |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0096
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G38600 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
AT1G24510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2814
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT1G09100 | Predictedtwo hybrid | FSW = 0.0274
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT5G20890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2755
| Unknown | CHAPERONIN PUTATIVE |
AT3G05530 | Predictedinteraction predictionGene neighbors methodCo-expression | FSW = 0.0225
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT3G02530 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3719
| Unknown | CHAPERONIN PUTATIVE |
AT5G10330 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT4G26840 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0115
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G20050 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1833
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G13160 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0216
| Unknown | SDA1 FAMILY PROTEIN |
AT1G50030 | Predictedco-fractionationCo-fractionation | FSW = 0.0748
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT2G27170 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0366
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G19240 | PredictedAffinity Capture-MS | FSW = 0.2106
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN N-TERMINAL PROTEIN MYRISTOYLATION LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) VACUOLAR IMPORT AND DEGRADATION VID27-RELATED (INTERPROIPR013863) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DEM PROTEIN-RELATED / DEFECTIVE EMBRYO AND MERISTEMS PROTEIN-RELATED (TAIRAT4G334001) HAS 206 BLAST HITS TO 202 PROTEINS IN 88 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 11 FUNGI - 117 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 40 (SOURCE NCBI BLINK) |
AT3G27000 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0364
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G02880 | PredictedAffinity Capture-MS | FSW = 0.0352
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT5G14240 | PredictedAffinity Capture-MS | FSW = 0.2722
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) PHOSDUCIN (INTERPROIPR001200) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) HAS 750 BLAST HITS TO 750 PROTEINS IN 282 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 486 FUNGI - 126 PLANTS - 51 VIRUSES - 0 OTHER EUKARYOTES - 85 (SOURCE NCBI BLINK) |
AT5G26360 | PredictedCo-purificationPhylogenetic profile methodCo-expression | FSW = 0.1972
| Unknown | CHAPERONIN PUTATIVE |
AT2G22040 | Predictedinterologs mapping | FSW = 0.0893
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G11830 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3270
| Unknown | CHAPERONIN PUTATIVE |
AT5G16070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3876
| Unknown | CHAPERONIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454