Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G04000 - ( short-chain dehydrogenase/reductase (SDR) family protein )

35 Proteins interacs with AT3G04000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G55290

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.8927

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G46170

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9573

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G55310

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.9437

Unknown

BINDING / CATALYTIC/ OXIDOREDUCTASE
AT1G62610

Predicted

Phylogenetic profile method

FSW = 0.9267

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G05530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7418

Unknown

IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) BINDING / CATALYTIC/ OXIDOREDUCTASE
AT1G63380

Predicted

Phylogenetic profile method

FSW = 0.9267

Unknown

BINDING / CATALYTIC/ OXIDOREDUCTASE
AT2G29350

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9175

Unknown

SAG13 ALCOHOL DEHYDROGENASE/ OXIDOREDUCTASE
AT3G51680

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.9573

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G47120

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9437

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G05260

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.9149

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G29260

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8798

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G29150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9175

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT5G18210

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9565

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G17845

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8523

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G10310

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8305

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G29340

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8927

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G03980

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.9720

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT5G06060

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9175

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT2G29320

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9437

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT2G29370

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9175

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT3G50560

Predicted

Gene fusion method

Co-expression

FSW = 0.1053

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G30670

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9437

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT4G13180

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9565

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G29330

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9573

Unknown

TRI (TROPINONE REDUCTASE) BINDING / CATALYTIC/ OXIDOREDUCTASE
AT2G29310

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9304

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT2G47130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9585

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G29360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9422

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT2G29300

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9437

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT3G42960

Predicted

Gene fusion method

Co-expression

FSW = 0.4477

Unknown

ATA1 (ARABIDOPSIS TAPETUM 1) BINDING / CATALYTIC/ OXIDOREDUCTASE
AT2G29290

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9049

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT3G26760

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.9267

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G26770

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8808

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G07440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8927

Unknown

TROPINONE REDUCTASE PUTATIVE / TROPINE DEHYDROGENASE PUTATIVE
AT2G47140

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9304

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT4G03140

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9149

Unknown

BINDING / CATALYTIC/ OXIDOREDUCTASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454