Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G04120 - ( GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase )
41 Proteins interacs with AT3G04120| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G30970
   | PredictedAffinity Capture-MS | FSW = 0.0497
| Class C:vacuolemitochondrion | ASP1 (ASPARTATE AMINOTRANSFERASE 1) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE |
| AT3G23990
| Predictedtwo hybrid | FSW = 0.0304
| Class C:vacuolemitochondrion | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
| AT3G05630
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0348
| Class C:vacuole | PLDP2 PHOSPHOLIPASE D |
| AT1G13440
| PredictedSynthetic LethalityShared biological functionEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1925
| Class C:plasma membranenucleusmitochondrioncytosol | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.0128
| Class C:plasma membranenucleusmitochondrioncytosol | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G56030
| PredictedAffinity Capture-MS | FSW = 0.0582
| Class C:plasma membranemitochondrioncytosol | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
| AT4G29810
| PredictedAffinity Capture-MS | FSW = 0.0076
| Class C:plasma membranecytosol | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
| AT1G79530
| PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2227
| Class C:plasma membranecytosol | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
| AT1G16300
| PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1600
| Class C:plasma membranecytosol | GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
| AT5G52640
| Predictedtwo hybrid | FSW = 0.0217
| Class C:plasma membranecytosol | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT2G42500
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0263
| Class C:plasma membrane | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G53470
| PredictedShared biological functionGene fusion method | FSW = 0.0421
| Class C:plasma membrane | ACBP1 (ACYL-COA BINDING PROTEIN 1) ACYL-COA BINDING / LEAD ION BINDING |
| AT1G79930
| PredictedAffinity Capture-MS | FSW = 0.0536
| Class C:plasma membrane | HSP91 ATP BINDING |
| AT1G75990
| PredictedAffinity Capture-MS | FSW = 0.0367
| Class C:plasma membrane | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
| AT1G65040
| PredictedAffinity Capture-MS | FSW = 0.0248
| Class C:plasma membrane | PROTEIN BINDING / ZINC ION BINDING |
| AT3G12480
| Predictedtwo hybrid | FSW = 0.0339
| Class C:nucleus | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G08740
| Predictedtwo hybrid | FSW = 0.0504
| Class C:mitochondrionextracellular | NDC1 (NAD(P)H DEHYDROGENASE C1) NADH DEHYDROGENASE |
| AT3G26650
| PredictedShared biological functionEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1579
| Unknown | GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE/ PROTEIN BINDING |
| AT5G16150
| Predictedin vitro | FSW = 0.0079
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G10050
| PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
| AT1G12900
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0612
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
| AT2G32410
| PredictedAffinity Capture-MS | FSW = 0.0928
| Unknown | AXL (AXR1-LIKE) BINDING / CATALYTIC |
| AT2G31970
| PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
| AT5G11210
| Predictedin vitro | FSW = 0.0239
| Unknown | ATGLR25 INTRACELLULAR LIGAND-GATED ION CHANNEL |
| AT3G25980
| PredictedSynthetic Lethality | FSW = 0.0143
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
| AT5G20850
| PredictedAffinity Capture-MS | FSW = 0.0372
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
| AT2G04660
| Predictedtwo hybrid | FSW = 0.0443
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G28290
| Predictedtwo hybrid | FSW = 0.0245
| Unknown | ATNEK3 (NIMA-RELATED KINASE3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G62540
| Predictedtwo hybrid | FSW = 0.0135
| Unknown | UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE |
| AT1G50670
| Predictedtwo hybrid | FSW = 0.0667
| Unknown | OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN |
| AT1G67420
| Predictedtwo hybrid | FSW = 0.0404
| Unknown | PEPTIDASE |
| AT3G63460
| Predictedtwo hybrid | FSW = 0.0348
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT2G31450
| PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | ENDONUCLEASE-RELATED |
| AT4G12400
| PredictedAffinity Capture-Western | FSW = 0.0152
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
| AT1G08260
| PredictedAffinity Capture-MS | FSW = 0.0101
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT1G16350
| PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
| AT3G63150
| PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING |
| AT4G38630
| PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT5G02880
| PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
| AT5G15870
| PredictedAffinity Capture-MS | FSW = 0.0437
| Unknown | GLYCOSYL HYDROLASE FAMILY 81 PROTEIN |
| AT5G67100
| PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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