Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G04520 - ( THA2 (Threonine Aldolase 2) threonine aldolase )

9 Proteins interacs with AT3G04520
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G59690Predicted

Affinity Capture-MS

FSW = 0.0106

Unknown

HISTONE H4
AT3G57610

Predicted

interaction prediction

Gene neighbors method

Co-expression

FSW = 0.1469

Unknown

ADSS (ADENYLOSUCCINATE SYNTHASE) ADENYLOSUCCINATE SYNTHASE
AT2G17630

Predicted

interologs mapping

FSW = 0.1113

Unknown

PHOSPHOSERINE AMINOTRANSFERASE PUTATIVE
AT3G06720

Predicted

interaction prediction

FSW = 0.0103

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT5G26780

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.1204

Unknown

SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING
AT5G05980

Predicted

Synthetic Lethality

FSW = 0.1113

Unknown

ATDFB (A THALIANA DHFS-FPGS HOMOLOG B) TETRAHYDROFOLYLPOLYGLUTAMATE SYNTHASE
AT3G02460

Predicted

Affinity Capture-Western

FSW = 0.1569

Unknown

PLANT ADHESION MOLECULE PUTATIVE
AT5G35980

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G08630

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2778

Unknown

THA1 (THREONINE ALDOLASE 1) ALDEHYDE-LYASE/ THREONINE ALDOLASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454