Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G04680 - ( CLPS3 (CLP-SIMILAR PROTEIN 3) binding )

21 Proteins interacs with AT3G04680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G23880

Experimental

Affinity Capture-Western

affinity technology

FSW = 0.2907

Unknown

CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING
AT5G51660

Experimental

Affinity Capture-Western

affinity technology

FSW = 0.2778

Unknown

CPSF160 NUCLEIC ACID BINDING
AT4G04885

Experimental

two hybrid

Affinity Capture-Western

two hybrid

Affinity Capture-Western

two hybrid

affinity technology

FSW = 0.3411

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT1G30460

Experimental

two hybrid

two hybrid

FSW = 0.2112

Unknown

CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT1G66500

Experimental

FSW = 0.3484

Unknown

ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN
AT5G43620

Experimental

FSW = 0.1683

Unknown

S-LOCUS PROTEIN-RELATED
AT5G13480

Experimental

Affinity Capture-Western

affinity technology

FSW = 0.1040

Unknown

FY PROTEIN BINDING
AT1G61010

Experimental

Affinity Capture-Western

FSW = 0.2358

Unknown

CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING
AT3G60820

Predicted

two hybrid

FSW = 0.0262

Unknown

PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G16030

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0222

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT5G20010

Predicted

two hybrid

FSW = 0.0379

Unknown

RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G17680

Predicted

Reconstituted Complex

Affinity Capture-MS

FSW = 0.1978

Unknown

TRANSCRIPTION FACTOR-RELATED
AT4G31720

Predicted

interaction prediction

FSW = 0.0152

Unknown

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT3G45590

Predicted

Affinity Capture-MS

FSW = 0.0480

Unknown

ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE
AT3G57360

Predicted

Affinity Capture-MS

FSW = 0.1177

Unknown

UNKNOWN PROTEIN
AT1G17760

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2444

Unknown

CSTF77 PROTEIN BINDING
AT1G18830Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0300

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G54380

Predicted

Affinity Capture-MS

FSW = 0.0148

Unknown

SAC3/GANP FAMILY PROTEIN
AT5G55190

Predicted

two hybrid

FSW = 0.0248

Unknown

RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G63460

Predicted

interaction prediction

FSW = 0.0626

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT5G39930

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1538

Unknown

CLPS5 (CLP1-SIMILAR PROTEIN 5)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454