Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G04680 - ( CLPS3 (CLP-SIMILAR PROTEIN 3) binding )
21 Proteins interacs with AT3G04680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G23880 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.2907
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
AT5G51660 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.2778
| Unknown | CPSF160 NUCLEIC ACID BINDING |
AT4G04885 | Experimentaltwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-Westerntwo hybridaffinity technology | FSW = 0.3411
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT1G30460 | Experimentaltwo hybridtwo hybrid | FSW = 0.2112
| Unknown | CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
AT1G66500 | Experimental | FSW = 0.3484
| Unknown | ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN |
AT5G43620 | Experimental | FSW = 0.1683
| Unknown | S-LOCUS PROTEIN-RELATED |
AT5G13480 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.1040
| Unknown | FY PROTEIN BINDING |
AT1G61010 | ExperimentalAffinity Capture-Western | FSW = 0.2358
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT3G60820 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0222
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G20010 | Predictedtwo hybrid | FSW = 0.0379
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT1G17680 | PredictedReconstituted ComplexAffinity Capture-MS | FSW = 0.1978
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G31720 | Predictedinteraction prediction | FSW = 0.0152
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT3G45590 | PredictedAffinity Capture-MS | FSW = 0.0480
| Unknown | ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE |
AT3G57360 | PredictedAffinity Capture-MS | FSW = 0.1177
| Unknown | UNKNOWN PROTEIN |
AT1G17760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2444
| Unknown | CSTF77 PROTEIN BINDING |
AT1G18830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0300
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G54380 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT5G55190 | Predictedtwo hybrid | FSW = 0.0248
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G63460 | Predictedinteraction prediction | FSW = 0.0626
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G39930 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1538
| Unknown | CLPS5 (CLP1-SIMILAR PROTEIN 5) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454