Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G04820 - ( pseudouridine synthase )
20 Proteins interacs with AT3G04820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
ATCG00160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0132
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT5G13300 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0053
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G18915 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G17690 | Predictedtwo hybrid | FSW = 0.0357
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT2G43400 | PredictedAffinity Capture-MS | FSW = 0.0994
| Unknown | ETFQO (ELECTRON-TRANSFER FLAVOPROTEINUBIQUINONE OXIDOREDUCTASE) CATALYTIC/ ELECTRON CARRIER/ ELECTRON-TRANSFERRING-FLAVOPROTEIN DEHYDROGENASE |
AT3G03600 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0385
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G13550 | Predictedtwo hybrid | FSW = 0.0155
| Unknown | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G36200 | Predictedsynthetic growth defect | FSW = 0.0214
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT5G16270 | Predictedtwo hybrid | FSW = 0.0469
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT5G44450 | Predictedtwo hybridtwo hybrid | FSW = 0.0368
| Unknown | METHYLTRANSFERASE |
AT5G61980 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT1G03110 | Predictedsynthetic growth defect | FSW = 0.2133
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G16350 | PredictedAffinity Capture-MS | FSW = 0.0465
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0561
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G79150 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0465
| Unknown | BINDING |
AT3G60240 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0235
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT5G24840 | Predictedsynthetic growth defect | FSW = 0.0215
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G12410 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0294
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0773
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454