Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G04840 - ( 40S ribosomal protein S3A (RPS3aA) )
32 Proteins interacs with AT3G04840Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G54340 | PredictedAffinity Capture-MS | FSW = 0.0714
| Class C:plasma membrane | ICDH (ISOCITRATE DEHYDROGENASE) ISOCITRATE DEHYDROGENASE (NADP+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT4G34670 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2863
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT1G50480 | PredictedAffinity Capture-MS | FSW = 0.0435
| Class C:plasma membrane | THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) ATP BINDING / COPPER ION BINDING / FORMATE-TETRAHYDROFOLATE LIGASE |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0102
| Class C:plasma membrane | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT3G18140 | Predictedtwo hybrid | FSW = 0.0238
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G36010 | Predictedtwo hybridCo-expression | FSW = 0.0278
| Unknown | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G19610 | Predictedtwo hybridCo-expression | FSW = 0.0270
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G04510 | PredictedCo-purification | FSW = 0.0047
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G33520 | Predictedtwo hybrid | FSW = 0.0176
| Unknown | ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G01040 | Predictedtwo hybrid | FSW = 0.0313
| Unknown | DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III |
AT3G17590 | Predictedtwo hybridCo-expression | FSW = 0.0115
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT1G55860 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE |
AT3G52090 | Predictedtwo hybrid | FSW = 0.0270
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G16190 | Predictedtwo hybrid | FSW = 0.0135
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.0064
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G13640 | PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0163
| Unknown | ATRLI1 TRANSPORTER |
AT5G08420 | PredictedAffinity Capture-MS | FSW = 0.0612
| Unknown | RNA BINDING |
AT4G28200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0659
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
AT1G69070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0527
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G11900 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
AT4G30890 | PredictedAffinity Capture-MS | FSW = 0.0435
| Unknown | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT4G27640 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT3G01160 | PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | UNKNOWN PROTEIN |
AT2G31320 | Predictedin vitrotwo hybridCo-expression | FSW = 0.0290
| Unknown | PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2) DNA BINDING / NAD OR NADH BINDING / NAD+ ADP-RIBOSYLTRANSFERASE/ ZINC ION BINDING |
AT1G48790 | Predictedtwo hybrid | FSW = 0.0327
| Unknown | MOV34 FAMILY PROTEIN |
AT1G60970 | Predictedtwo hybrid | FSW = 0.0385
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G19190 | Predictedtwo hybrid | FSW = 0.0134
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G12550 | Predictedtwo hybrid | FSW = 0.0241
| Unknown | OXIDOREDUCTASE FAMILY PROTEIN |
AT2G23780 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G19310 | Predictedtwo hybrid | FSW = 0.0588
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G24990 | Predictedtwo hybrid | FSW = 0.0508
| Unknown | RIO1 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454