Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05000 - ( transport protein particle (TRAPP) component Bet3 family protein )
32 Proteins interacs with AT3G05000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09200 | Predictedtwo hybrid | FSW = 0.0177
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT2G17360 | Predictedtwo hybridtwo hybrid | FSW = 0.0215
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT1G02130 | PredictedAffinity Capture-Western | FSW = 0.1215
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT3G11250 | Predictedtwo hybridtwo hybrid | FSW = 0.0595
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0C) |
AT1G16920 | Predictedinterologs mapping | FSW = 0.1620
| Unknown | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT1G55190 | PredictedPhenotypic Enhancement | FSW = 0.1441
| Unknown | PRA7 |
AT5G51820 | Predictedtwo hybridtwo hybrid | FSW = 0.0192
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT4G35830 | Predictedtwo hybrid | FSW = 0.0158
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO) |
AT1G59820 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1594
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT1G11890 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0350
| Unknown | SEC22 TRANSPORTER |
AT4G34580 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1388
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0202
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G13210 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.1135
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT1G06400 | Predictedinterologs mapping | FSW = 0.1151
| Unknown | ARA-2 GTP BINDING |
AT5G58420 | Predictedtwo hybrid | FSW = 0.0149
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT1G04260 | Predictedinterologs mapping | FSW = 0.1319
| Unknown | MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING |
AT1G71270 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0559
| Unknown | POK (POKY POLLEN TUBE) |
AT3G05710 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2223
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G71230 | Predictedtwo hybridtwo hybrid | FSW = 0.0139
| Unknown | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT4G04950 | Predictedtwo hybridtwo hybrid | FSW = 0.0393
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT4G25950 | Predictedtwo hybridtwo hybrid | FSW = 0.0244
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G54750 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSCo-purificationtwo hybridSynthetic Lethalityinterologs mappingCo-purificationCo-crystal Structureco-fractionationCo-fractionationinteraction prediction | FSW = 0.2415
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
AT1G80500 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridco-fractionationCo-fractionationAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1348
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.0822
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G57600 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1292
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT2G34770 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0812
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G37550 | PredictedSynthetic Lethality | FSW = 0.0976
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G02280 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridinterologs mappinginteraction prediction | FSW = 0.1691
| Unknown | SYNBINDIN PUTATIVE |
AT5G09350 | PredictedSynthetic Lethality | FSW = 0.2022
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G58030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridco-fractionationCo-fractionationinteraction prediction | FSW = 0.2284
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT1G09460 | Predictedinterologs mapping | FSW = 0.0586
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G51160 | Predictedinterologs mappinginteraction prediction | FSW = 0.2450
| Unknown | SYNBINDIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454