Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05420 - ( ACBP4 (ACYL-COA BINDING PROTEIN 4) acyl-CoA binding )

13 Proteins interacs with AT3G05420
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G16770

Experimental

two hybrid

Reconstituted Complex

in vitro

FSW = 0.1250

Class A:

plasma membrane

Class B:

nucleus

cytosol

Class D:

nucleus (p = 0.78)

 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT5G59880

Experimental

FSW = 0.0526

Class A:

plasma membrane

Class B:

mitochondrion

cytosol

 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) ACTIN BINDING
AT2G05210

Experimental

FSW = 0.1250

Unknown

 ATPOT1A (PROTECTION OF TELOMERES 1A) TELOMERIC DNA BINDING
AT3G48750

Predicted

biochemical

FSW = 0.0044

Class C:

plasma membrane

cytosol

 CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G27630

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.0909

Class C:

plasma membrane

cytosol

 ACBP5 (ACYL-COA BINDING PROTEIN 5) ACYL-COA BINDING
AT1G61000

Predicted

two hybrid

FSW = 0.0345

Class C:

plasma membrane

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK)
AT5G67200

Predicted

Gene fusion method

FSW = 0.3556

Class C:

plasma membrane

 LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE
AT3G21700

Predicted

Affinity Capture-Western

FSW = 0.0132

Unknown

 SGP2 GTP BINDING
AT5G25150

Predicted

Gene fusion method

FSW = 0.0428

Unknown

 TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT3G49660

Predicted

Co-purification

FSW = 0.0139

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G71770

Predicted

Shared biological function

Gene fusion method

FSW = 0.1170

Unknown

 PAB5 (POLY(A)-BINDING PROTEIN 5) RNA BINDING / POLY(A) BINDING / TRANSLATION INITIATION FACTOR
AT5G43020

Predicted

Gene fusion method

FSW = 0.3951

Unknown

 LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE
AT5G45840

Predicted

Gene fusion method

FSW = 0.3025

Unknown

 LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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