Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05530 - ( RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPase/ calmodulin binding )
46 Proteins interacs with AT3G05530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.2779
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G13550 | ExperimentalAffinity Capture-Western | FSW = 0.0157
| Unknown | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G29150 | ExperimentalAffinity Capture-Western | FSW = 0.3570
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G45000 | Predictedtwo hybridPhylogenetic profile methodCo-expression | FSW = 0.5529
| Class C:nucleus | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT3G13445 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0245
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT4G01610 | Predictedtwo hybrid | FSW = 0.0546
| Unknown | CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE |
AT1G79590 | Predictedtwo hybrid | FSW = 0.0071
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT4G14800 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.2919
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G02305 | Predictedtwo hybrid | FSW = 0.0784
| Unknown | CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE |
AT3G54660 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0117
| Unknown | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
AT1G13230 | PredictedGene fusion method | FSW = 0.0203
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionPhylogenetic profile method | FSW = 0.4215
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSin vitroin vivoPhylogenetic profile method | FSW = 0.3471
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT1G75990 | PredictedAffinity Capture-MS | FSW = 0.4452
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT2G20580 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.3052
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT5G42790 | PredictedAffinity Capture-MS | FSW = 0.3844
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G20140 | PredictedPhylogenetic profile method | FSW = 0.4917
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5533
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7142
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT5G58290 | Predictedinteraction predictionin vivoin vitrotwo hybridAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridCo-purificationco-fractionationCo-fractionationinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.5089
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT1G16190 | Predictedinteraction prediction | FSW = 0.2240
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G16470 | Predictedtwo hybridCo-expression | FSW = 0.1910
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G38470 | PredictedAffinity Capture-WesternCo-purificationAffinity Capture-MS | FSW = 0.2132
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G43010 | Predictedinteraction predictiontwo hybridtwo hybridAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.6238
| Unknown | RPT4A ATPASE |
AT5G57950 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.1344
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5333
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.1262
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G20000 | Predictedin vivoin vitroPhylogenetic profile method | FSW = 0.2425
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
AT1G51710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2463
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G64520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4646
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G79210 | PredictedAffinity Capture-Western | FSW = 0.0771
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT1G80410 | PredictedAffinity Capture-MS | FSW = 0.0564
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G03430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4253
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G17190 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.1526
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT2G32730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4509
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5030
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G12670 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0964
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT4G29040 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.6318
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.2307
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4237
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0216
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G23540 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.4973
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT4G21660 | Predictedinteraction prediction | FSW = 0.0129
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT3G55070 | Predictedinteraction prediction | FSW = 0.0400
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROTEIN BINDING / ZINC ION BINDING (TAIRAT4G378801) HAS 669 BLAST HITS TO 649 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 334 FUNGI - 200 PLANTS - 87 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK) |
AT3G03960 | Predictedinteraction predictionGene neighbors methodCo-expression | FSW = 0.0225
| Unknown | CHAPERONIN PUTATIVE |
AT1G53780 | PredictedPhylogenetic profile method | FSW = 0.3964
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454