Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05560 - ( 60S ribosomal protein L22-2 (RPL22B) )
41 Proteins interacs with AT3G05560| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G79550
   | PredictedPhenotypic Enhancement | FSW = 0.2959
| Class C:plasma membranenucleus | PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE |
| AT2G42590
| Predictedtwo hybrid | FSW = 0.0259
| Class C:plasma membranenucleus | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT5G27770
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1418
| Class C:plasma membranenucleus | 60S RIBOSOMAL PROTEIN L22 (RPL22C) |
| AT1G02500
| Predictedinterologs mapping | FSW = 0.0463
| Class C:plasma membranenucleus | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
| AT3G08710
| Predictedtwo hybrid | FSW = 0.0165
| Class C:plasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT2G21540
| PredictedAffinity Capture-MS | FSW = 0.0043
| Class C:plasma membrane | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
| AT5G52640
| PredictedAffinity Capture-MS | FSW = 0.0042
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT5G46630
| Predictedtwo hybridtwo hybrid | FSW = 0.0364
| Class C:plasma membrane | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
| AT1G71820
| Predictedinterologs mappinginterologs mappingSynthetic LethalityPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0091
| Class C:plasma membrane | SEC6 |
| AT5G58800
| PredictedPhenotypic Enhancement | FSW = 0.2075
| Class C:plasma membrane | QUINONE REDUCTASE FAMILY PROTEIN |
| AT2G37790
| Predictedtwo hybridCo-expression | FSW = 0.0040
| Class C:plasma membrane | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT4G19690
| Predictedco-fractionationCo-fractionation | FSW = 0.1155
| Class C:plasma membrane | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
| AT2G47610
| Predictedinterologs mappingSynthetic LethalityPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0084
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT3G20550
| Predictedco-fractionationCo-fractionation | FSW = 0.0739
| Class C:nucleus | DDL (DAWDLE) |
| AT5G67270
| PredictedAffinity Capture-MS | FSW = 0.0070
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
| AT5G04600
| PredictedAffinity Capture-MS | FSW = 0.0161
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G15520
| Predictedinterologs mappingSynthetic LethalityPhenotypic Enhancement | FSW = 0.0286
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S19 (RPS19B) |
| AT5G59230
| Predictedtwo hybrid | FSW = 0.0242
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
| AT4G39160
| Predictedtwo hybrid | FSW = 0.0182
| Class C:nucleus | DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G17690
| Predictedtwo hybrid | FSW = 0.0089
| Class C:nucleus | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
| AT1G07470
| Predictedtwo hybrid | FSW = 0.0101
| Class C:nucleus | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE |
| AT5G13980
| Predictedtwo hybridCo-expression | FSW = 0.0667
| Unknown | GLYCOSYL HYDROLASE FAMILY 38 PROTEIN |
| AT2G07680
| Predictedtwo hybrid | FSW = 0.0227
| Unknown | ATMRP11 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT2G19860
| PredictedPhenotypic Enhancement | FSW = 0.0516
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT1G11320
| Predictedtwo hybrid | FSW = 0.0205
| Unknown | UNKNOWN PROTEIN |
| AT3G06530
| PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | BINDING |
| AT1G10060
| Predictedtwo hybrid | FSW = 0.0199
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
| AT2G34750
| Predictedtwo hybridtwo hybrid | FSW = 0.0103
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
| AT5G17930
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0571
| Unknown | BINDING / PROTEIN BINDING |
| AT1G49400
| Predictedinterologs mappingSynthetic LethalityPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0571
| Unknown | EMB1129 (EMBRYO DEFECTIVE 1129) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G29800
| PredictedPhenotypic Enhancement | FSW = 0.3149
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
| AT1G70290
| PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT4G16370
| PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | ATOPT3 (OLIGOPEPTIDE TRANSPORTER) OLIGOPEPTIDE TRANSPORTER |
| AT4G38630
| PredictedAffinity Capture-MS | FSW = 0.0144
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT3G11270
| Predictedtwo hybrid | FSW = 0.0129
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
| AT5G38290
| Predictedtwo hybrid | FSW = 0.0515
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
| AT5G42190
| PredictedPhenotypic Enhancement | FSW = 0.0476
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G61330
| PredictedPhenotypic Enhancement | FSW = 0.1660
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT2G39760
| Predictedtwo hybrid | FSW = 0.0182
| Unknown | BPM3 PROTEIN BINDING |
| AT1G02830
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0421
| Unknown | 60S RIBOSOMAL PROTEIN L22 (RPL22A) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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