Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05630 - ( PLDP2 phospholipase D )
19 Proteins interacs with AT3G05630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | Predictedpull down | FSW = 0.0145
| Class C:vacuole | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT3G04120 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0348
| Class C:vacuole | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G79530 | Predictedin vitroin vivo | FSW = 0.0474
| Unknown | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G03690 | Predictedin vivoin vitro | FSW = 0.1404
| Unknown | FRUCTOSE-BISPHOSPHATE ALDOLASE PUTATIVE |
AT1G19650 | Predictedsynthetic growth defectsynthetic growth defectSynthetic Lethality | FSW = 0.0921
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE |
AT5G45970 | Predictedin vivoin vitroin vivoin vitrobiochemicalReconstituted Complex | FSW = 0.0381
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT1G10900 | Predictedin vitroin vivo | FSW = 0.0280
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT4G18910 | Predictedin vitroin vivo | FSW = 0.0455
| Unknown | NIP12 (NOD26-LIKE INTRINSIC PROTEIN 12) ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL |
AT3G10370 | Predictedpull down | FSW = 0.0606
| Unknown | SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
AT4G26520 | Predictedin vitro | FSW = 0.0863
| Unknown | FRUCTOSE-BISPHOSPHATE ALDOLASE CYTOPLASMIC |
AT5G40760 | Predictedpull down | FSW = 0.0316
| Unknown | G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT5G37810 | PredictedAffinity Capture-Western | FSW = 0.0462
| Unknown | NIP41 (NOD26-LIKE INTRINSIC PROTEIN 41) WATER CHANNEL |
AT5G03730 | PredictedbiochemicalAffinity Capture-WesternReconstituted Complex | FSW = 0.0449
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G32380 | Predictedpull down | FSW = 0.0382
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 2 (PRS2) |
AT5G14670 | Predictedin vivoin vivoin vivoin vitroReconstituted Complex | FSW = 0.0356
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G58690 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0808
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT4G34370 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT2G26830 | PredictedSynthetic Lethality | FSW = 0.0783
| Unknown | EMB1187 (EMBRYO DEFECTIVE 1187) KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G13570 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454