Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G05740 - ( RECQI1 (Arabidopsis RecQ helicase l1) ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding )
26 Proteins interacs with AT3G05740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G33650 | Predictedtwo hybrid | FSW = 0.0055
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT4G14970 | PredictedAffinity Capture-Western | FSW = 0.1634
| Unknown | UNKNOWN PROTEIN |
AT3G48190 | PredictedCo-purificationAffinity Capture-WesternReconstituted Complex | FSW = 0.4829
| Unknown | ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE |
AT3G18524 | PredictedCo-purification | FSW = 0.2086
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT1G16970 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0790
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT5G57015 | Predictedtwo hybrid | FSW = 0.0209
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G02070 | PredictedCo-purification | FSW = 0.2547
| Unknown | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT5G61000 | Predictedin vitroReconstituted Complexbiochemical | FSW = 0.0688
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT3G19210 | PredictedPhenotypic Enhancement | FSW = 0.0582
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G65470 | Predictedfar western blottingAffinity Capture-Westerntwo hybrid | FSW = 0.1343
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT2G31970 | PredictedCo-purification | FSW = 0.1642
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT3G23890 | Predictedtwo hybrid | FSW = 0.0108
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
AT5G40820 | Predictedtwo hybrid | FSW = 0.1818
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT1G07745 | Predictedtwo hybridAffinity Capture-WesternReconstituted Complexfar western blotting | FSW = 0.1720
| Unknown | RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G64520 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0994
| Unknown | XRCC2 |
AT5G54260 | PredictedCo-purification | FSW = 0.1506
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20850 | PredictedAffinity Capture-Westerntwo hybridin vivoin vitrofar western blotting | FSW = 0.1340
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G60530 | Predictedtwo hybrid | FSW = 0.1103
| Unknown | DYNAMIN FAMILY PROTEIN |
AT3G02680 | PredictedCo-purification | FSW = 0.5908
| Unknown | NBS1 (NIJMEGEN BREAKAGE SYNDROME 1) |
AT4G09140 | Predictedfar western blottingAffinity Capture-Westernfar western blottingtwo hybridtwo hybridin vivoin vitroCo-purificationfar western blottingAffinity Capture-WesternReconstituted Complex | FSW = 0.2079
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT5G63920 | Predictedfar western blottingAffinity Capture-WesternColocalizationfar western blottingin vitroin vivoAffinity Capture-WesternAffinity Capture-Westernfar western blottingAffinity Capture-WesternColocalizationin vivoin vitroReconstituted Complex | FSW = 0.1429
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT3G23590 | Predictedin vivoin vitroAffinity Capture-WesternReconstituted Complex | FSW = 0.2294
| Unknown | RFR1 (REF4-RELATED 1) |
AT5G02560 | PredictedAffinity Capture-WesternColocalization | FSW = 0.0665
| Unknown | HTA12 DNA BINDING |
AT5G22010 | PredictedCo-purification | FSW = 0.2300
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G26680 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0834
| Unknown | ENDONUCLEASE PUTATIVE |
AT1G09820 | PredictedGene fusion method | FSW = 0.0345
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454