Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G06540 - ( GDP dissociation inhibitor family protein / Rab GTPase activator family protein )
15 Proteins interacs with AT3G06540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G19640 | PredictedAffinity Capture-MSAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.1172
| Unknown | ARA7 GTP BINDING |
AT1G02130 | Predictedtwo hybridPhenotypic SuppressionbiochemicalAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.1304
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT2G44610 | Predictedin vitro | FSW = 0.0988
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT5G45130 | PredictedAffinity Capture-MSin vitroin vitroAffinity Capture-MS | FSW = 0.0897
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT3G18820 | Predictedin vitroin vitroEnriched domain pairCo-expression | FSW = 0.2338
| Unknown | ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING |
AT1G16010 | Predictedinterologs mapping | FSW = 0.1778
| Unknown | MAGNESIUM TRANSPORTER CORA-LIKE FAMILY PROTEIN (MRS2-1) |
AT3G09900 | PredictedAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.0818
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT5G47200 | Predictedin vitroin vitroin vivoEnriched domain pairCo-expression | FSW = 0.0835
| Unknown | ATRAB1A GTP BINDING |
AT3G54840 | Predictedinteraction predictionEnriched domain pairCo-expression | FSW = 0.0864
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G25980 | Predictedbiochemical | FSW = 0.0320
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G10260 | Predictedin vitro | FSW = 0.0400
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G12210 | Predictedbiochemicalfluorescence acceptor donor pairReconstituted Complex | FSW = 0.2424
| Unknown | GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT PUTATIVE / RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT PUTATIVE |
AT3G24090 | Predictedinterologs mapping | FSW = 0.0141
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT4G24490 | PredictedReconstituted Complexfluorescence acceptor donor pairfluorescence acceptor donor pairReconstituted Complexinteraction predictionEnriched domain pairCo-expression | FSW = 0.3200
| Unknown | PROTEIN PRENYLTRANSFERASE |
AT3G12070 | Predictedbiochemicalfluorescence acceptor donor pairReconstituted Complex | FSW = 0.2694
| Unknown | GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT PUTATIVE / RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454