Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G06580 - ( GALK ATP binding / galactokinase )

15 Proteins interacs with AT3G06580
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G29130

Predicted

Phenotypic Enhancement

FSW = 0.1000

Unknown

HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT1G50460

Predicted

Phenotypic Enhancement

FSW = 0.1053

Unknown

HKL1 (HEXOKINASE-LIKE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT2G04940

Predicted

two hybrid

FSW = 0.0403

Unknown

SCRAMBLASE-RELATED
AT3G22890

Predicted

synthetic growth defect

FSW = 0.0260

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT5G15450

Predicted

two hybrid

FSW = 0.0425

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G17745

Predicted

interaction prediction

two hybrid

FSW = 0.0357

Unknown

PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0091

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G13980

Predicted

biochemical

FSW = 0.0162

Unknown

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT5G19000

Predicted

two hybrid

FSW = 0.0592

Unknown

ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING
AT1G20693

Predicted

Synthetic Lethality

FSW = 0.0165

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G61040

Predicted

Synthetic Lethality

FSW = 0.0103

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT3G14090

Predicted

Synthetic Lethality

FSW = 0.0677

Unknown

ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING
AT5G48640

Predicted

interologs mapping

FSW = 0.0311

Unknown

CYCLIN FAMILY PROTEIN
AT5G48630

Predicted

interologs mapping

FSW = 0.0395

Unknown

CYCLIN FAMILY PROTEIN
AT2G39760

Predicted

two hybrid

FSW = 0.0902

Unknown

BPM3 PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454