Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G06670 - ( binding )
33 Proteins interacs with AT3G06670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02520 | PredictedPhenotypic Suppression | FSW = 0.0285
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G07790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0407
| Unknown | HTB1 DNA BINDING |
AT2G45300 | PredictedPhenotypic Suppression | FSW = 0.0416
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0172
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G26720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.4527
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G67270 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0623
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | PredictedPhenotypic Suppression | FSW = 0.0478
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0078
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G03870 | PredictedPhenotypic Enhancement | FSW = 0.0405
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G47620 | PredictedPhenotypic Suppression | FSW = 0.0350
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT3G57300 | PredictedPhenotypic Enhancement | FSW = 0.0458
| Unknown | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.0779
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0386
| Unknown | HISTONE H2B PUTATIVE |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.0264
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0259
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT3G47690 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0400
| Unknown | ATEB1A MICROTUBULE BINDING |
AT4G34270 | PredictedAffinity Capture-MS | FSW = 0.0802
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT2G31970 | PredictedPhenotypic Enhancement | FSW = 0.0698
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G66130 | PredictedPhenotypic Suppression | FSW = 0.1086
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G40820 | PredictedPhenotypic Suppression | FSW = 0.0392
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G55260 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G04730 | PredictedPhenotypic Enhancement | FSW = 0.0793
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0826
| Unknown | H2AXA DNA BINDING |
AT1G29150 | PredictedPhenotypic Enhancement | FSW = 0.0170
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.0765
| Unknown | SGA2 |
AT1G06790 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G55915 | Predictedtwo hybrid | FSW = 0.0423
| Unknown | ZINC ION BINDING |
AT3G22590 | PredictedPhenotypic Enhancement | FSW = 0.0568
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT5G48640 | PredictedPhenotypic Enhancement | FSW = 0.0272
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G63670 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.1181
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G08565 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0735
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G12340 | Predictedtwo hybrid | FSW = 0.0249
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT3G12180 | Predictedinteraction prediction | FSW = 0.0263
| Unknown | CORNICHON FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454