Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G06910 - ( ULP1A (UB-LIKE PROTEASE 1A) SUMO-specific protease/ cysteine-type peptidase )
24 Proteins interacs with AT3G06910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G13710 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT1G79280 | Predictedinterologs mapping | FSW = 0.1003
| Unknown | NUA (NUCLEAR PORE ANCHOR) |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT5G53480 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0422
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G13120 | Predictedtwo hybridAffinity Capture-WesternCo-expression | FSW = 0.0756
| Unknown | EMB1745 (EMBRYO DEFECTIVE 1745) |
AT1G16970 | PredictedSynthetic Lethality | FSW = 0.0645
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT5G37720 | Predictedinterologs mapping | FSW = 0.0158
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G54280 | PredictedSynthetic Rescue | FSW = 0.0441
| Unknown | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G06720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0457
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT3G19210 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0619
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G31970 | PredictedSynthetic LethalitySynthetic LethalityCo-expression | FSW = 0.0747
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT4G26840 | PredictedCo-crystal StructureReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.0367
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G54260 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0641
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20850 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0552
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G04020 | PredictedSynthetic Rescue | FSW = 0.0902
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT4G25120 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1120
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G33620 | PredictedSynthetic RescueSynthetic Rescueinterologs mappingSynthetic Rescue | FSW = 0.2323
| Unknown | ULP1 PROTEASE FAMILY PROTEIN |
AT5G19820 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.0441
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G26680 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.0653
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G55310 | PredictedSynthetic Rescue | FSW = 0.0828
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT1G02690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0494
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT5G02530 | Predictedinterologs mappingCo-expression | FSW = 0.0190
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G13180 | Predictedtwo hybrid | FSW = 0.0141
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G08910 | Predictedtwo hybrid | FSW = 0.0761
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454