Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07100 - ( protein transport protein Sec24 putative )
78 Proteins interacs with AT3G07100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G11320 | Predictedtwo hybrid | FSW = 0.0530
| Class C:unclear | UNKNOWN PROTEIN |
AT5G40890 | Predictedtwo hybrid | FSW = 0.0123
| Class C:unclear | ATCLC-A (CHLORIDE CHANNEL A) ANION CHANNEL/ NITRATE TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT5G26980 | Predictedtwo hybridtwo hybrid | FSW = 0.0076
| Class C:golgiendoplasmic reticulum | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT1G31780 | PredictedPhenotypic Enhancement | FSW = 0.0312
| Class C:golgi | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | PredictedPhenotypic Enhancement | FSW = 0.0342
| Class C:golgi | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT3G24350 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybridinteraction prediction | FSW = 0.0516
| Class C:golgi | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT1G11890 | PredictedAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pairinterologs mappinginteraction prediction | FSW = 0.0503
| Class C:endoplasmic reticulum | SEC22 TRANSPORTER |
AT3G55360 | Predictedtwo hybridtwo hybrid | FSW = 0.0039
| Class C:endoplasmic reticulum | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT2G17520 | Predictedinterologs mapping | FSW = 0.0376
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
AT3G05710 | PredictedPhenotypic Enhancement | FSW = 0.0268
| Class C:endoplasmic reticulum | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT4G09580 | Predictedtwo hybrid | FSW = 0.0122
| Class C:endoplasmic reticulum | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOPLASMIC RETICULUM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G719401) HAS 2023 BLAST HITS TO 2023 PROTEINS IN 496 SPECIES ARCHAE - 2 BACTERIA - 1014 METAZOA - 198 FUNGI - 27 PLANTS - 131 VIRUSES - 0 OTHER EUKARYOTES - 651 (SOURCE NCBI BLINK) |
AT4G14880 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE |
AT3G09630 | Predictedtwo hybridtwo hybrid | FSW = 0.0216
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G56070 | Predictedtwo hybridtwo hybrid | FSW = 0.0063
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G08710 | Predictedtwo hybrid | FSW = 0.0398
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT4G36750 | Predictedtwo hybrid | FSW = 0.0911
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT1G22840 | Predictedtwo hybridtwo hybrid | FSW = 0.0163
| Unknown | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT4G01610 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE |
AT1G02305 | Predictedtwo hybridtwo hybrid | FSW = 0.0293
| Unknown | CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0194
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G45770 | PredictedAffinity Capture-Westerntwo hybridPhenotypic Enhancement | FSW = 0.1225
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT2G42590 | Predictedtwo hybridPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0711
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G47370 | Predictedtwo hybrid | FSW = 0.0197
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT2G47160 | PredictedAffinity Capture-MS | FSW = 0.0422
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT5G62300 | Predictedtwo hybrid | FSW = 0.0138
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G23450 | Predictedtwo hybrid | FSW = 0.0123
| Unknown | ATLCBK1 (A THALIANA LONG-CHAIN BASE (LCB) KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE |
AT1G69850 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
AT1G56330 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexCo-purification | FSW = 0.0981
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT4G15000 | Predictedtwo hybrid | FSW = 0.0420
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT1G27310 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | NTF2A (NUCLEAR TRANSPORT FACTOR 2A) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G11570 | Predictedtwo hybrid | FSW = 0.0366
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) PUTATIVE |
AT4G15940 | Predictedtwo hybrid | FSW = 0.0278
| Unknown | FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0930
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G70190 | Predictedtwo hybrid | FSW = 0.1284
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT4G10040 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT4G21710 | Predictedtwo hybridtwo hybrid | FSW = 0.0091
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G15900 | Predictedtwo hybrid | FSW = 0.0691
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G29540 | Predictedtwo hybrid | FSW = 0.0163
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G71940 | Predictedtwo hybridtwo hybrid | FSW = 0.0395
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G095801) HAS 2462 BLAST HITS TO 2462 PROTEINS IN 530 SPECIES ARCHAE - 4 BACTERIA - 1186 METAZOA - 194 FUNGI - 22 PLANTS - 141 VIRUSES - 0 OTHER EUKARYOTES - 915 (SOURCE NCBI BLINK) |
AT3G57550 | Predictedtwo hybrid | FSW = 0.0100
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT4G19190 | Predictedtwo hybridtwo hybrid | FSW = 0.0058
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G21520 | Predictedtwo hybridtwo hybrid | FSW = 0.0119
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G21540 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
AT5G18200 | Predictedtwo hybridtwo hybrid | FSW = 0.0272
| Unknown | UTPGALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ RIBOSE-5-PHOSPHATE ADENYLYLTRANSFERASE |
AT5G20030 | Predictedtwo hybrid | FSW = 0.0129
| Unknown | AGENET DOMAIN-CONTAINING PROTEIN |
AT5G44450 | Predictedtwo hybridtwo hybrid | FSW = 0.0125
| Unknown | METHYLTRANSFERASE |
AT5G63770 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | ATDGK2 (DIACYLGLYCEROL KINASE 2) DIACYLGLYCEROL KINASE |
AT4G24710 | Predictedtwo hybridtwo hybrid | FSW = 0.0446
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G43670 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0268
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT1G07880 | Predictedtwo hybrid | FSW = 0.0558
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G18830 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0807
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G29230 | Predictedtwo hybrid | FSW = 0.0981
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT2G28060 | Predictedtwo hybridtwo hybridtwo hybrid | FSW = 0.0454
| Unknown | PROTEIN KINASE-RELATED |
AT2G34770 | PredictedPhenotypic Enhancement | FSW = 0.0184
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G39590 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT3G01340 | PredictedAffinity Capture-MS | FSW = 0.0616
| Unknown | PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G02730 | Predictedtwo hybrid | FSW = 0.0039
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G57620 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0854
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G71530 | Predictedtwo hybrid | FSW = 0.1596
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G47090 | PredictedSynthetic Lethality | FSW = 0.0083
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G18860 | Predictedtwo hybrid | FSW = 0.0263
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G60860 | PredictedAffinity Capture-Western | FSW = 0.0149
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G14160 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybridco-fractionationCo-fractionationinterologs mappingAffinity Capture-MSinterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.1441
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT5G19090 | Predictedtwo hybrid | FSW = 0.1500
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT5G42720 | Predictedsynthetic growth defect | FSW = 0.0083
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G48010 | Predictedtwo hybridtwo hybrid | FSW = 0.0188
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT5G52210 | PredictedPhenotypic Enhancement | FSW = 0.0863
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G66610 | Predictedtwo hybrid | FSW = 0.0113
| Unknown | DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING |
AT4G30820 | Predictedtwo hybrid | FSW = 0.1453
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT5G38290 | Predictedtwo hybrid | FSW = 0.1582
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G61150 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT3G63460 | Predictedinteraction predictioninterologs mapping | FSW = 0.0652
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G45030 | Predictedtwo hybrid | FSW = 0.0428
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20A) |
AT3G16700 | Predictedtwo hybrid | FSW = 0.0265
| Unknown | FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN |
AT1G01960 | Predictedinteraction prediction | FSW = 0.0163
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454