Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07110 - ( 60S ribosomal protein L13A (RPL13aA) )
22 Proteins interacs with AT3G07110Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0053
| Class C:plastid | HISTONE H4 |
AT5G09650 | PredictedAffinity Capture-MS | FSW = 0.0355
| Class C:plastid | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G06380 | PredictedAffinity Capture-MS | FSW = 0.0879
| Class C:plastid | RIBOSOMAL PROTEIN-RELATED |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0167
| Class C:plastid | IMPORTIN BETA-2 PUTATIVE |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0452
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT3G55620 | PredictedAffinity Capture-MS | FSW = 0.0888
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G57150 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0695
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT1G72440 | PredictedAffinity Capture-MS | FSW = 0.0818
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT5G60790 | PredictedAffinity Capture-MS | FSW = 0.0653
| Unknown | ATGCN1 TRANSPORTER |
AT3G01310 | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G48760 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1786
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AD) |
AT4G17620 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | GLYCINE-RICH PROTEIN |
AT1G08410 | PredictedAffinity Capture-MS | FSW = 0.1082
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G13640 | PredictedAffinity Capture-MS | FSW = 0.0790
| Unknown | ATRLI1 TRANSPORTER |
AT2G21440 | PredictedAffinity Capture-MS | FSW = 0.1163
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G18220 | PredictedAffinity Capture-MS | FSW = 0.1220
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT1G36730 | PredictedAffinity Capture-MS | FSW = 0.0940
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT1G04170 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0409
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G61770 | PredictedAffinity Capture-MS | FSW = 0.0949
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT3G24830 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2206
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT4G13170 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3571
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AC) |
AT3G09890 | PredictedGene fusion method | FSW = 0.1429
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454