Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07110 - ( 60S ribosomal protein L13A (RPL13aA) )

22 Proteins interacs with AT3G07110
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07660Predicted

Affinity Capture-MS

FSW = 0.0053

Class C:

plastid

HISTONE H4
AT5G09650

Predicted

Affinity Capture-MS

FSW = 0.0355

Class C:

plastid

ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G06380

Predicted

Affinity Capture-MS

FSW = 0.0879

Class C:

plastid

RIBOSOMAL PROTEIN-RELATED
AT5G53480

Predicted

Affinity Capture-MS

FSW = 0.0167

Class C:

plastid

IMPORTIN BETA-2 PUTATIVE
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0452

Class C:

nucleus

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT3G55620

Predicted

Affinity Capture-MS

FSW = 0.0888

Class C:

nucleus

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT3G57150

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0695

Class C:

nucleus

NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT1G72440

Predicted

Affinity Capture-MS

FSW = 0.0818

Class C:

nucleus

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G60790

Predicted

Affinity Capture-MS

FSW = 0.0653

Unknown

ATGCN1 TRANSPORTER
AT3G01310

Predicted

Affinity Capture-MS

FSW = 0.0602

Unknown

ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G48760

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1786

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AD)
AT4G17620

Predicted

Affinity Capture-MS

FSW = 0.0216

Unknown

GLYCINE-RICH PROTEIN
AT1G08410

Predicted

Affinity Capture-MS

FSW = 0.1082

Unknown

GTP-BINDING FAMILY PROTEIN
AT3G13640

Predicted

Affinity Capture-MS

FSW = 0.0790

Unknown

ATRLI1 TRANSPORTER
AT2G21440

Predicted

Affinity Capture-MS

FSW = 0.1163

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G18220

Predicted

Affinity Capture-MS

FSW = 0.1220

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT1G36730

Predicted

Affinity Capture-MS

FSW = 0.0940

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT1G04170

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0409

Unknown

EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G61770

Predicted

Affinity Capture-MS

FSW = 0.0949

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT3G24830

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2206

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT4G13170

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.3571

Unknown

60S RIBOSOMAL PROTEIN L13A (RPL13AC)
AT3G09890

Predicted

Gene fusion method

FSW = 0.1429

Unknown

ANKYRIN REPEAT FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454