Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G07180 - ( GPI transamidase component PIG-S-related )
18 Proteins interacs with AT3G07180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0167
| Class C:vacuole | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0218
| Class C:vacuole | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G12580 | Predictedtwo hybrid | FSW = 0.0119
| Class C:vacuole | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT4G17170 | Predictedtwo hybrid | FSW = 0.0173
| Class C:vacuole | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE |
AT1G31780 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0650
| Class C:vacuole | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G11890 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0538
| Class C:endoplasmic reticulum | SEC22 TRANSPORTER |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0413
| Class C:endoplasmic reticulum | CALCIUM-TRANSPORTING ATPASE |
AT2G17520 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0299
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0296
| Class C:endoplasmic reticulum | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G13440 | PredictedAffinity Capture-MS | FSW = 0.0606
| Unknown | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G16300 | PredictedAffinity Capture-MS | FSW = 0.0779
| Unknown | GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0284
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT1G63110 | PredictedAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.0356
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT1G49670 | Predictedtwo hybrid | FSW = 0.1905
| Unknown | NQR BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G16300 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S VPS51/VPS67 (INTERPROIPR014812) HAS 204 BLAST HITS TO 183 PROTEINS IN 76 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 127 FUNGI - 34 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 19 (SOURCE NCBI BLINK) |
AT5G40580 | Predictedtwo hybrid | FSW = 0.0282
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.1047
| Unknown | CATALYTIC/ TRANSFERASE |
AT1G12730 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0629
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454