Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07180 - ( GPI transamidase component PIG-S-related )

18 Proteins interacs with AT3G07180
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

Affinity Capture-MS

FSW = 0.0167

Class C:

vacuole

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G04820Predicted

Affinity Capture-MS

FSW = 0.0218

Class C:

vacuole

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G12580

Predicted

two hybrid

FSW = 0.0119

Class C:

vacuole

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT4G17170

Predicted

two hybrid

FSW = 0.0173

Class C:

vacuole

RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE
AT1G31780

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0650

Class C:

vacuole

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT1G11890

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0538

Class C:

endoplasmic reticulum

SEC22 TRANSPORTER
AT1G07670

Predicted

Phenotypic Enhancement

FSW = 0.0413

Class C:

endoplasmic reticulum

CALCIUM-TRANSPORTING ATPASE
AT2G17520

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0299

Class C:

endoplasmic reticulum

IRE1A ENDORIBONUCLEASE/ KINASE
AT1G10130

Predicted

interologs mapping

FSW = 0.0296

Class C:

endoplasmic reticulum

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT1G13440

Predicted

Affinity Capture-MS

FSW = 0.0606

Unknown

GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G16300

Predicted

Affinity Capture-MS

FSW = 0.0779

Unknown

GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G02490

Predicted

two hybrid

FSW = 0.0284

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT1G63110

Predicted

Affinity Capture-Western

interologs mapping

interaction prediction

FSW = 0.0356

Unknown

CELL DIVISION CYCLE PROTEIN-RELATED
AT1G49670

Predicted

two hybrid

FSW = 0.1905

Unknown

NQR BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G16300

Predicted

two hybrid

FSW = 0.0381

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S VPS51/VPS67 (INTERPROIPR014812) HAS 204 BLAST HITS TO 183 PROTEINS IN 76 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 127 FUNGI - 34 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 19 (SOURCE NCBI BLINK)
AT5G40580

Predicted

two hybrid

FSW = 0.0282

Unknown

PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G22530

Predicted

Phenotypic Enhancement

FSW = 0.1047

Unknown

CATALYTIC/ TRANSFERASE
AT1G12730

Predicted

Affinity Capture-Western

interologs mapping

FSW = 0.0629

Unknown

CELL DIVISION CYCLE PROTEIN-RELATED

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454