Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07590 - ( small nuclear ribonucleoprotein D1 putative / snRNP core protein D1 putative / Sm protein D1 putative )
29 Proteins interacs with AT3G07590| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G20960
   | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3723
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G09760
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3333
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT1G09770
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2967
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G23930
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4923
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT5G27720
| PredictedAffinity Capture-MS | FSW = 0.1602
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3194
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT1G20580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5054
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G28060
| PredictedAffinity Capture-MSCo-expression | FSW = 0.3008
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT1G04510
| PredictedAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3585
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G72560
| Predictedtwo hybrid | FSW = 0.0069
| Class C:nucleus | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
| AT1G03330
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2246
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT2G18740
| PredictedAffinity Capture-MSCo-expression | FSW = 0.5590
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT4G30220
| PredictedAffinity Capture-MSCo-expression | FSW = 0.4103
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT1G65700
| Predictedtwo hybridCo-expression | FSW = 0.1000
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G80070
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3743
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT4G31120
| PredictedReconstituted Complex | FSW = 0.0455
| Unknown | SKB1 (SHK1 BINDING PROTEIN 1) PROTEIN METHYLTRANSFERASE |
| AT4G21660
| PredictedAffinity Capture-MS | FSW = 0.3514
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT1G44910
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2683
| Unknown | PROTEIN BINDING |
| AT3G03340
| PredictedAffinity Capture-MS | FSW = 0.2324
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
| AT2G32600
| PredictedAffinity Capture-MS | FSW = 0.2740
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT2G32160
| PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
| AT1G66510
| PredictedAffinity Capture-MSCo-expression | FSW = 0.2207
| Unknown | AAR2 PROTEIN FAMILY |
| AT1G14640
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3773
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT1G60170
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4286
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT4G03430
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2978
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT5G06160
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3311
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT1G11650
| PredictedAffinity Capture-MS | FSW = 0.1695
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
| AT1G79880
| PredictedSynthetic Lethality | FSW = 0.0227
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
| AT1G65660
| Predictedtwo hybrid | FSW = 0.1111
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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