Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07750 - ( 3 exoribonuclease family domain 1-containing protein )

8 Proteins interacs with AT3G07750
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G61620

Experimental

FSW = 0.3673

Unknown

RRP41 3-5-EXORIBONUCLEASE/ RNA BINDING
AT1G03360

Experimental

FSW = 0.3712

Unknown

ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA BINDING / EXONUCLEASE
AT5G61760

Predicted

two hybrid

FSW = 0.0800

Unknown

ATIPK2BETA INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ INOSITOL TRISPHOSPHATE 6-KINASE
AT1G65440

Predicted

Co-purification

FSW = 0.1412

Unknown

GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT4G17620

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0340

Unknown

GLYCINE-RICH PROTEIN
AT4G27490

Predicted

two hybrid

two hybrid

FSW = 0.4800

Unknown

3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN
AT5G38890

Predicted

in vitro

Affinity Capture-MS

Co-expression

FSW = 0.0840

Unknown

EXORIBONUCLEASE-RELATED
AT3G12990

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1634

Unknown

RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454