Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G07790 - ( DGCR14-related )
27 Proteins interacs with AT3G07790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G11130 | Predictedtwo hybrid | FSW = 0.1318
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT3G08530 | Predictedtwo hybridtwo hybrid | FSW = 0.0498
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT1G18080 | Predictedtwo hybrid | FSW = 0.0181
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT3G15000 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | LOCATED IN MITOCHONDRION EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PLASTID DEVELOPMENTAL PROTEIN DAG PUTATIVE (TAIRAT3G067902) HAS 50779 BLAST HITS TO 24732 PROTEINS IN 941 SPECIES ARCHAE - 10 BACTERIA - 4862 METAZOA - 25623 FUNGI - 7071 PLANTS - 6957 VIRUSES - 900 OTHER EUKARYOTES - 5356 (SOURCE NCBI BLINK) |
AT3G51800 | Predictedtwo hybridtwo hybrid | FSW = 0.0282
| Unknown | ATG2 AMINOPEPTIDASE/ METALLOEXOPEPTIDASE |
AT1G31440 | Predictedtwo hybrid | FSW = 0.1290
| Unknown | SH3 DOMAIN-CONTAINING PROTEIN 1 (SH3P1) |
AT5G04990 | Predictedtwo hybridtwo hybrid | FSW = 0.0167
| Unknown | SAD1/UNC-84 PROTEIN-RELATED |
AT5G14170 | Predictedtwo hybridtwo hybrid | FSW = 0.0623
| Unknown | CHC1 |
AT3G14120 | Predictedtwo hybridtwo hybrid | FSW = 0.0356
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEAR PORE PROTEIN 84/107 (INTERPROIPR007252) HAS 207 BLAST HITS TO 206 PROTEINS IN 78 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 123 FUNGI - 57 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 5 (SOURCE NCBI BLINK) |
AT3G18130 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT4G16420 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G72340 | Predictedtwo hybrid | FSW = 0.0328
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT4G11330 | Predictedtwo hybrid | FSW = 0.0055
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT3G22480 | Predictedtwo hybrid | FSW = 0.0036
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G27530 | Predictedtwo hybridtwo hybridtwo hybrid | FSW = 0.0072
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT4G18060 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | CLATHRIN BINDING |
AT1G16570 | Predictedtwo hybridtwo hybrid | FSW = 0.0178
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G27752 | Predictedtwo hybrid | FSW = 0.0762
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST CONTAINS INTERPRO DOMAIN/S UBIQUITIN SYSTEM COMPONENT CUE (INTERPROIPR003892) HAS 330 BLAST HITS TO 312 PROTEINS IN 96 SPECIES ARCHAE - 0 BACTERIA - 26 METAZOA - 143 FUNGI - 77 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK) |
AT1G60070 | Predictedtwo hybridtwo hybrid | FSW = 0.0952
| Unknown | BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G26460 | Predictedtwo hybridtwo hybrid | FSW = 0.0485
| Unknown | RED FAMILY PROTEIN |
AT4G20325 | Predictedtwo hybrid | FSW = 0.0137
| Unknown | UNKNOWN PROTEIN |
AT3G19420 | Predictedtwo hybrid | FSW = 0.0130
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT4G01270 | Predictedtwo hybrid | FSW = 0.0281
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT4G15030 | Predictedtwo hybridtwo hybrid | FSW = 0.0306
| Unknown | UNKNOWN PROTEIN |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0242
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G49880 | Predictedtwo hybridtwo hybrid | FSW = 0.0356
| Unknown | MITOTIC CHECKPOINT FAMILY PROTEIN |
AT3G07740 | Predictedtwo hybrid | FSW = 0.0283
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454