Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G08580 - ( AAC1 (ADP/ATP CARRIER 1) ATPADP antiporter/ binding )
24 Proteins interacs with AT3G08580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G13490 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.6151
| Class C:vacuoleunclearplastidnucleusmitochondrion | AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING |
AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.0355
| Class C:vacuole | BINDING |
AT4G28390 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0980
| Class C:unclearplastidmitochondrion | AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING |
AT3G51870 | PredictedGene fusion methodCo-expression | FSW = 0.1481
| Class C:plastidmitochondrion | BINDING / TRANSPORTER |
AT1G11890 | Predictedtwo hybrid | FSW = 0.0334
| Class C:plasma membrane | SEC22 TRANSPORTER |
AT5G20890 | PredictedSynthetic Lethality | FSW = 0.1032
| Class C:plasma membrane | CHAPERONIN PUTATIVE |
AT5G07320 | Predictedinterologs mapping | FSW = 0.0324
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G17400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2381
| Class C:mitochondrion | ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1) ATPADP ANTIPORTER/ BINDING |
AT5G56450 | PredictedPhylogenetic profile method | FSW = 0.2564
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT4G33720 | Predictedtwo hybrid | FSW = 0.0257
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G10130 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G20050 | PredictedSynthetic Lethality | FSW = 0.0762
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT2G15790 | Predictedin vitroin vitroin vitro | FSW = 0.0247
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G18390 | Predictedin vivoin vitro | FSW = 0.0312
| Unknown | TTN5 (TITAN 5) GTP BINDING / GTPASE |
AT2G16950 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT1G53880 | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0581
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT5G26360 | PredictedSynthetic Lethality | FSW = 0.0709
| Unknown | CHAPERONIN PUTATIVE |
AT3G48150 | Predictedtwo hybrid | FSW = 0.0268
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT2G23190 | Predictedtwo hybrid | FSW = 0.0988
| Unknown | CYP81D7 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT2G04845 | Predictedtwo hybrid | FSW = 0.1379
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN |
AT2G41980 | Predictedtwo hybrid | FSW = 0.0536
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT1G71790 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT1G59860 | Predictedtwo hybrid | FSW = 0.1471
| Unknown | 176 KDA CLASS I HEAT SHOCK PROTEIN (HSP176A-CI) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454