Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G08700 - ( UBC12 (ubiquitin-conjugating enzyme 12) small conjugating protein ligase/ ubiquitin-protein ligase )
30 Proteins interacs with AT3G08700Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0066
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT2G01250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0637
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT1G36340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6017
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT1G14320 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1076
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G80030 | PredictedSynthetic Lethality | FSW = 0.0093
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G23430 | PredictedSynthetic Lethality | FSW = 0.0210
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G53480 | PredictedSynthetic Lethality | FSW = 0.0075
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G16890 | PredictedPhylogenetic profile method | FSW = 0.4111
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G64230 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4183
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT3G13550 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3057
| Unknown | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G32050 | PredictedAffinity Capture-MS | FSW = 0.2051
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G72340 | PredictedAffinity Capture-MS | FSW = 0.0806
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT2G16740 | PredictedSynthetic LethalityPhylogenetic profile methodCo-expression | FSW = 0.1520
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT4G14320 | PredictedAffinity Capture-MSAffinity Capture-MSDosage Growth DefectAffinity Capture-Western | FSW = 0.1228
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT5G06130 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2580
| Unknown | CHAPERONE PROTEIN DNAJ-RELATED |
AT5G51180 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | UNKNOWN PROTEIN |
AT4G36050 | PredictedReconstituted Complexbiochemical | FSW = 0.0131
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G56150 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4584
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT3G55380 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3778
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT3G08690 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5663
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT5G41700 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1863
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G46460 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4272
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT5G25760 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6145
| Unknown | PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G53300 | PredictedPhylogenetic profile method | FSW = 0.4895
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT4G27960 | PredictedPhylogenetic profile method | FSW = 0.3956
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT5G42990 | PredictedPhylogenetic profile method | FSW = 0.5447
| Unknown | UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT5G62540 | PredictedPhylogenetic profile method | FSW = 0.5314
| Unknown | UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE |
AT2G02760 | PredictedPhylogenetic profile method | FSW = 0.1305
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT1G14400 | PredictedPhylogenetic profile method | FSW = 0.1544
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G78870 | PredictedPhylogenetic profile method | FSW = 0.3301
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454