Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09100 - ( mRNA capping enzyme family protein )
27 Proteins interacs with AT3G09100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G50850 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0130
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT3G52140 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0124
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G16030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0106
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT4G35800 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalityReconstituted ComplexProtein-peptideAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingCo-expression | FSW = 0.0917
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G47250 | PredictedAffinity Capture-MS | FSW = 0.0435
| Unknown | RNA HELICASE PUTATIVE |
AT1G76810 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0730
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT4G11420 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0399
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT3G53110 | PredictedSynthetic Rescue | FSW = 0.0162
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT4G25630 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0466
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G18040 | PredictedSynthetic Lethality | FSW = 0.0737
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT4G10710 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1081
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G10670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0903
| Unknown | GTC2 |
AT3G62310 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0187
| Unknown | RNA HELICASE PUTATIVE |
AT4G08350 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0711
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0850
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G06210 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0936
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT3G23890 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0561
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
AT4G26840 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0078
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G44150 | PredictedSynthetic Lethality | FSW = 0.0259
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT5G63670 | PredictedSynthetic Lethality | FSW = 0.0757
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | HISTONE H4 |
AT3G56150 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0814
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT1G21160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0556
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT3G22860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0618
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT5G08565 | PredictedSynthetic Lethality | FSW = 0.1120
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G01290 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1659
| Unknown | MRNA GUANYLYLTRANSFERASE/ PHOSPHATASE/ POLYNUCLEOTIDE 5-PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT5G28210 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3030
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454