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AT3G09200 - ( 60S acidic ribosomal protein P0 (RPP0B) )

93 Proteins interacs with AT3G09200

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.1878	Class C: vacuole plastid plasma membrane nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.3610	Class C: vacuole plastid plasma membrane nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.2086	Class C: vacuole plastid plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2882	Class C: vacuole plastid plasma membrane nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.3197	Class C: vacuole plastid plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.2286	Class C: vacuole plastid nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.2448	Class C: vacuole plastid	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.2623	Class C: vacuole plasma membrane nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.3345	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.2335	Class C: vacuole plasma membrane nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.2292	Class C: vacuole plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G01100	Predicted interaction prediction two hybrid two hybrid two hybrid interologs mapping Co-expression	FSW = 0.0719	Class C: vacuole plasma membrane	60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1A)
AT5G27850	Predicted Affinity Capture-MS	FSW = 0.1232	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.2898	Class C: vacuole plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G11250	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.1142	Class C: vacuole plasma membrane	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0C)
AT3G20000	Predicted interologs mapping	FSW = 0.0242	Class C: vacuole	TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL
AT3G57990	Predicted Synthetic Lethality	FSW = 0.0432	Class C: vacuole	UNKNOWN PROTEIN
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.3772	Class C: vacuole	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2286	Class C: plastid plasma membrane nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.2847	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G22890	Predicted Synthetic Lethality interologs mapping	FSW = 0.0415	Class C: plastid plasma membrane	APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT5G59690	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0461	Class C: plastid nucleus	HISTONE H4
AT4G33650	Predicted Synthetic Lethality	FSW = 0.0419	Class C: plastid	DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT5G51820	Predicted Synthetic Lethality Affinity Capture-Western	FSW = 0.0562	Class C: plastid	PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.2821	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.3225	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT1G02780	Predicted Affinity Capture-Western interologs mapping	FSW = 0.0163	Class C: plasma membrane nucleus	EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.3073	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT2G27710	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.2770	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.0554	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.3067	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.3345	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810	Predicted Affinity Capture-MS	FSW = 0.0972	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT4G08800	Predicted Synthetic Lethality	FSW = 0.1015	Class C: plasma membrane	PROTEIN KINASE PUTATIVE
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.2761	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G47100	Predicted two hybrid	FSW = 0.0079	Class C: plasma membrane	CBL9 CALCIUM ION BINDING
AT1G80050	Predicted Affinity Capture-Western Synthetic Lethality	FSW = 0.0381	Class C: plasma membrane	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT1G60740	Predicted interaction prediction	FSW = 0.0371	Class C: plasma membrane	PEROXIREDOXIN TYPE 2 PUTATIVE
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3165	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G55620	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0688	Class C: nucleus	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT3G54280	Predicted Phenotypic Suppression Affinity Capture-MS	FSW = 0.0366	Class C: nucleus	RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G23620	Predicted Affinity Capture-Western	FSW = 0.0718	Class C: nucleus	BRIX DOMAIN-CONTAINING PROTEIN
AT3G57150	Predicted Affinity Capture-MS	FSW = 0.0632	Class C: nucleus	NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.3323	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT2G47620	Predicted Affinity Capture-MS	FSW = 0.0099	Class C: nucleus	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.2245	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT5G37720	Predicted Affinity Capture-MS	FSW = 0.0314	Class C: nucleus	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT5G54910	Predicted Affinity Capture-MS	FSW = 0.0854	Class C: nucleus	DEAD/DEAH BOX HELICASE PUTATIVE
AT2G37990	Predicted Affinity Capture-Western	FSW = 0.0663	Class C: nucleus	RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT4G14300	Predicted Affinity Capture-MS	FSW = 0.0272	Class C: nucleus	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE
AT1G74560	Predicted Reconstituted Complex	FSW = 0.0597	Unknown	NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT5G26860	Predicted Affinity Capture-MS	FSW = 0.0036	Unknown	LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT1G10490	Predicted Affinity Capture-MS	FSW = 0.1575	Unknown	UNKNOWN PROTEIN
AT2G46520	Predicted Affinity Capture-MS	FSW = 0.0272	Unknown	CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.2520	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT4G17620	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1465	Unknown	GLYCINE-RICH PROTEIN
AT3G48150	Predicted two hybrid	FSW = 0.0133	Unknown	APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING
AT4G15930	Predicted two hybrid	FSW = 0.0086	Unknown	MICROTUBULE MOTOR
AT3G05000	Predicted two hybrid	FSW = 0.0177	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT5G24510	Predicted two hybrid	FSW = 0.0313	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE
AT5G01580	Predicted two hybrid	FSW = 0.0111	Unknown	OSH1 (OAS HIGH ACCUMULATION 1) CATALYTIC
AT1G65970	Predicted Affinity Capture-MS	FSW = 0.0384	Unknown	TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2) ANTIOXIDANT/ OXIDOREDUCTASE
AT2G03690	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0116	Unknown	COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN
AT2G03820	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0492	Unknown	NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT2G48100	Predicted Affinity Capture-Western Synthetic Lethality	FSW = 0.0616	Unknown	EXONUCLEASE FAMILY PROTEIN
AT3G01590	Predicted Affinity Capture-MS interologs mapping interologs mapping interologs mapping two hybrid Affinity Capture-Western Affinity Capture-MS two hybrid Affinity Capture-MS Affinity Capture-Western two hybrid Co-purification Synthetic Lethality	FSW = 0.0311	Unknown	ALDOSE 1-EPIMERASE FAMILY PROTEIN
AT1G10170	Predicted Affinity Capture-MS	FSW = 0.0181	Unknown	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G16280	Predicted Affinity Capture-MS	FSW = 0.0443	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G20080	Predicted Affinity Capture-MS	FSW = 0.0631	Unknown	SYTB
AT1G52500	Predicted Synthetic Lethality	FSW = 0.0397	Unknown	ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G52980	Predicted Affinity Capture-MS	FSW = 0.1270	Unknown	GTP-BINDING FAMILY PROTEIN
AT2G16950	Predicted Affinity Capture-MS	FSW = 0.0248	Unknown	TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G27200	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1048	Unknown	GTP-BINDING FAMILY PROTEIN
AT2G39840	Predicted Affinity Capture-MS	FSW = 0.0241	Unknown	TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G01160	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0903	Unknown	UNKNOWN PROTEIN
AT3G10530	Predicted Affinity Capture-MS	FSW = 0.0449	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G14010	Predicted Affinity Capture-MS	FSW = 0.0111	Unknown	CID4 (CTC-INTERACTING DOMAIN 4) PROTEIN BINDING
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.0485	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.2752	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G59540	Predicted interologs mapping Synthetic Lethality Affinity Capture-Western	FSW = 0.0465	Unknown	60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT3G60240	Predicted Synthetic Lethality	FSW = 0.0276	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT3G60860	Predicted Affinity Capture-MS	FSW = 0.0237	Unknown	GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G19210	Predicted Affinity Capture-MS	FSW = 0.1481	Unknown	ATRLI2 TRANSPORTER
AT4G28200	Predicted Affinity Capture-MS	FSW = 0.0641	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G38630	Predicted Affinity Capture-MS	FSW = 0.0181	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G06600	Predicted interologs mapping	FSW = 0.0138	Unknown	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G08420	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1033	Unknown	RNA BINDING
AT5G19510	Predicted Synthetic Lethality	FSW = 0.0218	Unknown	ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2)
AT5G44030	Predicted Affinity Capture-MS two hybrid Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS two hybrid Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western two hybrid Affinity Capture-Western Reconstituted Complex interologs mapping Affinity Capture-MS	FSW = 0.0364	Unknown	CESA4 (CELLULOSE SYNTHASE A4) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G49930	Predicted Affinity Capture-MS	FSW = 0.0211	Unknown	EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.2860	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G36420	Predicted Affinity Capture-MS	FSW = 0.0231	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G40010	Predicted Phylogenetic profile method Co-expression	FSW = 0.2562	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G09200 - ( 60S acidic ribosomal protein P0 (RPP0B) )

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