Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09360 - ( RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding )

10 Proteins interacs with AT3G09360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G13445

Predicted

in vitro

in vivo

Affinity Capture-Western

in vivo

in vitro

FSW = 0.0300

Class C:

nucleus

 TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G17680

Predicted

in vitro

Affinity Capture-Western

in vivo

FSW = 0.2125

Class C:

nucleus

 TRANSCRIPTION FACTOR-RELATED
AT1G55520

Predicted

in vivo

in vivo

in vitro

in vitro

Enriched domain pair

Co-expression

FSW = 0.0548

Class C:

nucleus

 TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT3G49410

Predicted

in vitro

FSW = 0.0972

Class C:

nucleus

 UNKNOWN PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0035

Unknown

 60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G23710

Predicted

in vivo

FSW = 0.2455

Unknown

 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G47160

Predicted

Affinity Capture-MS

FSW = 0.0445

Unknown

 BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT3G12280

Predicted

in vivo

in vitro

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0043

Unknown

 RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT5G67380

Predicted

Affinity Capture-Western

FSW = 0.0166

Unknown

 CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT5G26110

Predicted

Phenotypic Enhancement

FSW = 0.0308

Unknown

 ATP BINDING / CATALYTIC/ PROTEIN KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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