Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G09440 - ( heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) )
41 Proteins interacs with AT3G09440Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G09140 | Experimentalpull down | FSW = 0.0260
| Class A:nucleusClass B:vacuoleplasma membraneClass D:cytosol (p = 0.67) | SF2/ASF-LIKE SPLICING MODULATOR (SRP30) |
AT1G02840 | Experimentalpull down | FSW = 0.0096
| Class A:nucleusClass B:vacuoleplasma membrane | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G11260 | Experimentalinteraction detection methodpull down | FSW = 0.0967
| Unknown | SGT1B PROTEIN BINDING |
AT5G28840 | Experimentalco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.0203
| Unknown | GME (GDP-D-MANNOSE 35-EPIMERASE) GDP-MANNOSE 35-EPIMERASE/ NAD OR NADH BINDING / CATALYTIC |
AT5G02500 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0966
| Class C:vacuoleplasma membranenucleus | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT3G12580 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0284
| Class C:vacuoleplasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G16240 | PredictedPhenotypic Suppression | FSW = 0.0373
| Class C:vacuolenucleus | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT4G35000 | PredictedAffinity Capture-MS | FSW = 0.0216
| Class C:vacuole | APX3 (ASCORBATE PEROXIDASE 3) L-ASCORBATE PEROXIDASE |
AT5G09590 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0326
| Class C:vacuole | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT5G10350 | PredictedPhenotypic Enhancement | FSW = 0.0180
| Class C:vacuole | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G07090 | PredictedPhenotypic Suppression | FSW = 0.0492
| Class C:vacuole | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT1G16030 | PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.0265
| Class C:plasma membrane | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G02490 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0502
| Class C:plasma membrane | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT3G47960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1026
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G14420 | PredictedAffinity Capture-MS | FSW = 0.0216
| Class C:nucleus | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT2G36170 | PredictedCo-purification | FSW = 0.0297
| Class C:nucleus | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT4G13980 | Predictedbiochemical | FSW = 0.0068
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G44350 | PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT5G15450 | Predictedtwo hybrid | FSW = 0.0487
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G56410 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1500
| Unknown | ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2) ATP BINDING |
AT1G10070 | Predictedbiochemical | FSW = 0.0447
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT4G39200 | PredictedSynthetic Lethality | FSW = 0.0348
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G26690 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G35530 | PredictedAffinity Capture-MS | FSW = 0.1071
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G19540 | PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G05660 | PredictedAffinity Capture-MS | FSW = 0.0434
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G10210 | Predictedbiochemical | FSW = 0.0432
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G27320 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G74810 | PredictedSynthetic Lethality | FSW = 0.0769
| Unknown | BOR5 ANION EXCHANGER |
AT2G47570 | PredictedPhenotypic Enhancement | FSW = 0.0111
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G22290 | PredictedPhenotypic Enhancement | FSW = 0.0796
| Unknown | UNKNOWN PROTEIN |
AT4G04695 | PredictedPhenotypic Suppression | FSW = 0.0360
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G12790 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | ATP-BINDING FAMILY PROTEIN |
AT4G18593 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0967
| Unknown | DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0164
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G13150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1412
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G38890 | PredictedPhenotypic Suppression | FSW = 0.0188
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G58380 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0165
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G60550 | PredictedSynthetic Lethality | FSW = 0.0484
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT5G14060 | PredictedSynthetic Lethality | FSW = 0.0357
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454