Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09440 - ( heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) )

41 Proteins interacs with AT3G09440
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G09140

Experimental

pull down

FSW = 0.0260

Class A:

nucleus

Class B:

vacuole

plasma membrane

Class D:

cytosol (p = 0.67)

SF2/ASF-LIKE SPLICING MODULATOR (SRP30)
AT1G02840

Experimental

pull down

FSW = 0.0096

Class A:

nucleus

Class B:

vacuole

plasma membrane

SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G11260

Experimental

interaction detection method

pull down

FSW = 0.0967

Unknown

SGT1B PROTEIN BINDING
AT5G28840

Experimental

co-fractionation

Co-fractionation

co-fractionation

Co-fractionation

FSW = 0.0203

Unknown

GME (GDP-D-MANNOSE 35-EPIMERASE) GDP-MANNOSE 35-EPIMERASE/ NAD OR NADH BINDING / CATALYTIC
AT5G02500

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0966

Class C:

vacuole

plasma membrane

nucleus

HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT3G12580

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0284

Class C:

vacuole

plasma membrane

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT1G16240

Predicted

Phenotypic Suppression

FSW = 0.0373

Class C:

vacuole

nucleus

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT4G35000

Predicted

Affinity Capture-MS

FSW = 0.0216

Class C:

vacuole

APX3 (ASCORBATE PEROXIDASE 3) L-ASCORBATE PEROXIDASE
AT5G09590

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0326

Class C:

vacuole

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT5G10350

Predicted

Phenotypic Enhancement

FSW = 0.0180

Class C:

vacuole

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT5G07090

Predicted

Phenotypic Suppression

FSW = 0.0492

Class C:

vacuole

40S RIBOSOMAL PROTEIN S4 (RPS4B)
AT1G16030

Predicted

Affinity Capture-MS

Phylogenetic profile method

Co-expression

FSW = 0.0265

Class C:

plasma membrane

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT5G02490

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0502

Class C:

plasma membrane

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT3G47960

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1026

Class C:

plasma membrane

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT3G14420

Predicted

Affinity Capture-MS

FSW = 0.0216

Class C:

nucleus

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT2G36170Predicted

Co-purification

FSW = 0.0297

Class C:

nucleus

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT4G13980

Predicted

biochemical

FSW = 0.0068

Class C:

nucleus

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT2G44350

Predicted

Affinity Capture-MS

FSW = 0.0240

Unknown

ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE
AT5G15450

Predicted

two hybrid

FSW = 0.0487

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G56410

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1500

Unknown

ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2) ATP BINDING
AT1G10070

Predicted

biochemical

FSW = 0.0447

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT4G39200

Predicted

Synthetic Lethality

FSW = 0.0348

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT1G26690

Predicted

Affinity Capture-MS

FSW = 0.0239

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G35530Predicted

Affinity Capture-MS

FSW = 0.1071

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G19540

Predicted

Affinity Capture-MS

FSW = 0.0449

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G05660

Predicted

Affinity Capture-MS

FSW = 0.0434

Unknown

POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G10210

Predicted

biochemical

FSW = 0.0432

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G27320

Predicted

Affinity Capture-MS

FSW = 0.0408

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G74810

Predicted

Synthetic Lethality

FSW = 0.0769

Unknown

BOR5 ANION EXCHANGER
AT2G47570

Predicted

Phenotypic Enhancement

FSW = 0.0111

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT3G22290

Predicted

Phenotypic Enhancement

FSW = 0.0796

Unknown

UNKNOWN PROTEIN
AT4G04695

Predicted

Phenotypic Suppression

FSW = 0.0360

Unknown

CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G12790

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

ATP-BINDING FAMILY PROTEIN
AT4G18593

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0967

Unknown

DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED
AT5G04800

Predicted

Phenotypic Enhancement

FSW = 0.0164

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G13150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1412

Unknown

ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING
AT5G38890

Predicted

Phenotypic Suppression

FSW = 0.0188

Unknown

EXORIBONUCLEASE-RELATED
AT5G58380

Predicted

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.0165

Unknown

SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G60550

Predicted

Synthetic Lethality

FSW = 0.0484

Unknown

GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE
AT5G14060

Predicted

Synthetic Lethality

FSW = 0.0357

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454