Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09680 - ( 40S ribosomal protein S23 (RPS23A) )

8 Proteins interacs with AT3G09680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G27400

Predicted

two hybrid

FSW = 0.0356

Unknown

60S RIBOSOMAL PROTEIN L17 (RPL17A)
AT4G33090

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT5G26340

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0562

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G77210

Predicted

Affinity Capture-MS

FSW = 0.0604

Unknown

SUGAR TRANSPORTER PUTATIVE
AT2G07675

Predicted

Phylogenetic profile method

FSW = 0.0697

Unknown

RIBOSOMAL PROTEIN S12 MITOCHONDRIAL FAMILY PROTEIN
AT5G02960

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.0556

Unknown

40S RIBOSOMAL PROTEIN S23 (RPS23B)
AT2G40930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1341

Unknown

UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) UBIQUITIN-SPECIFIC PROTEASE
AT5G41820

Predicted

Affinity Capture-Western

interologs mapping

Affinity Capture-MS

FSW = 0.2307

Unknown

GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT-RELATED / RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT-RELATED

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454