Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09800 - ( protein binding )

39 Proteins interacs with AT3G09800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G16480

Predicted

Affinity Capture-MS

FSW = 0.0065

Unknown

MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT5G09590

Predicted

Synthetic Lethality

Synthetic Lethality

interologs mapping

FSW = 0.0999

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0381

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G57870

Predicted

Synthetic Lethality

FSW = 0.0469

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT5G01410

Predicted

Synthetic Lethality

FSW = 0.1404

Unknown

RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT4G35090

Predicted

Phenotypic Enhancement

FSW = 0.2517

Unknown

CAT2 (CATALASE 2) CATALASE
AT5G62880

Predicted

Affinity Capture-MS

FSW = 0.0042

Unknown

ARAC10 GTP BINDING
AT3G19930

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2380

Unknown

STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT4G08520

Predicted

Phylogenetic profile method

FSW = 0.1616

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.1068

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT2G39480

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.3292

Unknown

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0205

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G34450

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3956

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G13445

Predicted

Phenotypic Suppression

FSW = 0.0692

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G76300

Predicted

Phenotypic Enhancement

FSW = 0.1758

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT3G29800

Predicted

Affinity Capture-Western

FSW = 0.4590

Unknown

AAA-TYPE ATPASE FAMILY
AT2G17270

Predicted

Synthetic Lethality

FSW = 0.1349

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G33730

Predicted

Phenotypic Suppression

FSW = 0.1275

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G15900

Predicted

Phenotypic Enhancement

FSW = 0.0797

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G29540

Predicted

Phenotypic Enhancement

FSW = 0.0161

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G02970

Predicted

Phenotypic Suppression

FSW = 0.0173

Unknown

WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE
AT1G20696

Predicted

Synthetic Lethality

FSW = 0.0202

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G34340

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2230

Unknown

ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT1G49520

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2614

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G73810

Predicted

Synthetic Lethality

FSW = 0.1307

Unknown

UNKNOWN PROTEIN
AT2G23070

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1190

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G24960

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1302

Unknown

UNKNOWN PROTEIN
AT2G27340

Predicted

Phenotypic Enhancement

FSW = 0.1731

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT3G53650

Predicted

Phenotypic Enhancement

FSW = 0.2689

Unknown

HISTONE H2B PUTATIVE
AT5G11570

Predicted

Phenotypic Enhancement

FSW = 0.1905

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G52200

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3252

Unknown

UNKNOWN PROTEIN
AT5G53120

Predicted

Phenotypic Enhancement

FSW = 0.3885

Unknown

SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE
AT5G65690

Predicted

Phenotypic Enhancement

FSW = 0.3723

Unknown

PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING
AT3G19450

Predicted

Synthetic Lethality

FSW = 0.0727

Unknown

ATCAD4 CINNAMYL-ALCOHOL DEHYDROGENASE
AT4G24040

Predicted

Phenotypic Enhancement

FSW = 0.2342

Unknown

TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT4G33950

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3376

Unknown

OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT5G57190

Predicted

Phenotypic Enhancement

FSW = 0.2319

Unknown

PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT4G34450

Predicted

in vitro

in vivo

two hybrid

Enriched domain pair

FSW = 0.0297

Unknown

COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE
AT1G60970

Predicted

Phylogenetic profile method

FSW = 0.0794

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454