Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09800 - ( protein binding )
39 Proteins interacs with AT3G09800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0065
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT5G09590 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.0999
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0381
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G57870 | PredictedSynthetic Lethality | FSW = 0.0469
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
AT5G01410 | PredictedSynthetic Lethality | FSW = 0.1404
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT4G35090 | PredictedPhenotypic Enhancement | FSW = 0.2517
| Unknown | CAT2 (CATALASE 2) CATALASE |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | ARAC10 GTP BINDING |
AT3G19930 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2380
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G08520 | PredictedPhylogenetic profile method | FSW = 0.1616
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT5G26340 | PredictedPhenotypic Enhancement | FSW = 0.1068
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G39480 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.3292
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G34450 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3956
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G13445 | PredictedPhenotypic Suppression | FSW = 0.0692
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G76300 | PredictedPhenotypic Enhancement | FSW = 0.1758
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT3G29800 | PredictedAffinity Capture-Western | FSW = 0.4590
| Unknown | AAA-TYPE ATPASE FAMILY |
AT2G17270 | PredictedSynthetic Lethality | FSW = 0.1349
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT4G33730 | PredictedPhenotypic Suppression | FSW = 0.1275
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G15900 | PredictedPhenotypic Enhancement | FSW = 0.0797
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G29540 | PredictedPhenotypic Enhancement | FSW = 0.0161
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G02970 | PredictedPhenotypic Suppression | FSW = 0.0173
| Unknown | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE |
AT1G20696 | PredictedSynthetic Lethality | FSW = 0.0202
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G34340 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2230
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G49520 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2614
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G73810 | PredictedSynthetic Lethality | FSW = 0.1307
| Unknown | UNKNOWN PROTEIN |
AT2G23070 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1190
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G24960 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1302
| Unknown | UNKNOWN PROTEIN |
AT2G27340 | PredictedPhenotypic Enhancement | FSW = 0.1731
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT3G53650 | PredictedPhenotypic Enhancement | FSW = 0.2689
| Unknown | HISTONE H2B PUTATIVE |
AT5G11570 | PredictedPhenotypic Enhancement | FSW = 0.1905
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G52200 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3252
| Unknown | UNKNOWN PROTEIN |
AT5G53120 | PredictedPhenotypic Enhancement | FSW = 0.3885
| Unknown | SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE |
AT5G65690 | PredictedPhenotypic Enhancement | FSW = 0.3723
| Unknown | PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
AT3G19450 | PredictedSynthetic Lethality | FSW = 0.0727
| Unknown | ATCAD4 CINNAMYL-ALCOHOL DEHYDROGENASE |
AT4G24040 | PredictedPhenotypic Enhancement | FSW = 0.2342
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT4G33950 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3376
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT5G57190 | PredictedPhenotypic Enhancement | FSW = 0.2319
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT4G34450 | Predictedin vitroin vivotwo hybridEnriched domain pair | FSW = 0.0297
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT1G60970 | PredictedPhylogenetic profile method | FSW = 0.0794
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454