Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09820 - ( ADK1 (adenosine kinase 1) adenosine kinase/ copper ion binding )
64 Proteins interacs with AT3G09820| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G01280
   | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3579
| Class C:plastidplasma membrane | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
| AT3G22890
| PredictedSynthetic Lethality | FSW = 0.0342
| Class C:plastidplasma membrane | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
| AT1G07790
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1221
| Class C:plastid | HTB1 DNA BINDING |
| AT3G54660
| PredictedAffinity Capture-MS | FSW = 0.1481
| Class C:plastid | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
| AT2G26080
| Predictedtwo hybrid | FSW = 0.0252
| Class C:plastid | ATGLDP2 (ARABIDOPSIS THALIANA GLYCINE DECARBOXYLASE P-PROTEIN 2) ATP BINDING / GLYCINE DEHYDROGENASE (DECARBOXYLATING) |
| AT5G15450
| PredictedAffinity Capture-MS | FSW = 0.1309
| Class C:plastid | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G80030
| PredictedSynthetic Lethality | FSW = 0.0172
| Class C:plastid | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT1G72730
| PredictedAffinity Capture-MS | FSW = 0.1424
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
| AT4G08690
| PredictedAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.5573
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT3G25800
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1931
| Class C:plasma membrane | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT4G04720
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2353
| Class C:plasma membrane | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G03300
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1190
| Class C:plasma membrane | ADK2 (ADENOSINE KINASE 2) ADENOSINE KINASE/ COPPER ION BINDING / KINASE |
| AT1G63110
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2773
| Class C:plasma membrane | CELL DIVISION CYCLE PROTEIN-RELATED |
| AT5G45380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5345
| Class C:plasma membrane | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
| AT3G46900
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4365
| Class C:plasma membrane | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
| AT1G14010
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5133
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
| AT3G59280
| PredictedAffinity Capture-MS | FSW = 0.0816
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
| AT2G04940
| PredictedAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.2107
| Unknown | SCRAMBLASE-RELATED |
| AT4G14340
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3859
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G59960
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.5904
| Unknown | UNKNOWN PROTEIN |
| AT1G30810
| PredictedCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.5528
| Unknown | TRANSCRIPTION FACTOR |
| AT3G08980
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5263
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
| AT3G55605
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1720
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
| AT4G07820
| Predictedtwo hybrid | FSW = 0.1676
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT2G38960
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3195
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
| AT4G35640
| PredictedCo-purificationAffinity Capture-MSCo-purification | FSW = 0.0549
| Unknown | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
| AT3G08730
| PredictedCo-purification | FSW = 0.0132
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G17190
| PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.1711
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT3G54860
| Predictedtwo hybrid | FSW = 0.0156
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
| AT1G77130
| Predictedtwo hybrid | FSW = 0.0299
| Unknown | PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT3G10070
| Predictedtwo hybridtwo hybrid | FSW = 0.0058
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
| AT1G02730
| Predictedtwo hybridAffinity Capture-Westerntwo hybrid | FSW = 0.2136
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
| AT1G05830
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.3452
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
| AT1G06790
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.3867
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G10350
| PredictedCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.3962
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT1G18550
| Predictedtwo hybrid | FSW = 0.2196
| Unknown | ATP BINDING / MICROTUBULE MOTOR |
| AT1G21370
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2023
| Unknown | UNKNOWN PROTEIN |
| AT1G23300
| PredictedAffinity Capture-MS | FSW = 0.0279
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT1G23460
| Predictedtwo hybrid | FSW = 0.0091
| Unknown | POLYGALACTURONASE |
| AT1G59580
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0748
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
| AT1G63660
| Predictedtwo hybrid | FSW = 0.0412
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
| AT1G74250
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.4342
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT2G20410
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic RescueProtein-peptidesynthetic growth defectSynthetic Lethality | FSW = 0.7666
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
| AT2G29680
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.4797
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
| AT2G29940
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.6203
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT2G31060
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6125
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
| AT3G05760
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.4712
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT3G52590 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3435
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G53880
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5003
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT3G54630
| PredictedAffinity Capture-MS | FSW = 0.2143
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
| AT4G00810
| PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3686
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B) |
| AT4G29910
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4766
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
| AT4G31770
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5134
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
| AT4G31985
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3123
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
| AT4G37490
| Predictedtwo hybridAffinity Capture-Western | FSW = 0.1327
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G16960
| PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.4464
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G47080
| PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
| AT5G49970
| PredictedAffinity Capture-MS | FSW = 0.1699
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
| AT5G59890
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3537
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
| AT4G19560
| Predictedtwo hybrid | FSW = 0.0362
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
| AT5G03030
| PredictedAffinity Capture-MS | FSW = 0.2319
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT5G06150
| PredictedAffinity Capture-MS | FSW = 0.1165
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT4G03430
| PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT1G50370
| PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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